Git issues with submodules

Hey everyone from Blender developers!

As you might already know, we've recently switched from SVN to Git to host Blender sources. In general it works really awesome, but we've got some issues with submodules.

in SVN we had separate repositories for addons and translations which were attached to main tree as svn:external. The reason for this was:

1. Separate commit access between core sources and addons so nobody
accidentally breaks anything in the core.
2. Separate commit history to help tracking issues down.

For the most developers and all artists (yes, we've got loads of artists who builds blender on their own) it makes sense to always checkout latest versions of addons and translations when updating working tree.

We used Git submodules as a replacement for svn:external, with some tweaks and specific of update procedure.

Namely, we always do `git submodule update --remote` to pull all the latest changes from submodules. This will mark checkout as modified because submodule hash changes. To avoid infinite commits of submodule hash we've added ignore=all to their configuration.

In most cases it works fine, but there're some circumstances when it gives weirdo issues.

Namely, `git ls-files -m` will show addons as modified, regardless ignore=all configuration. In the same time `git diff-index --name-only HEAD --` will show no changes at all.

This leads to issues with Arcanist (which is a Phabricator's tool) who considers addons as uncommited changes and either complains on this or just adds this to commits.

This issue i might easily reproduce on my laptop with latest Git 1.8.4.3. There're also some more issues which happens to our developers and which i can not quite reproduce.

Sometimes it happens so git checkout to another branch yields about uncommited changes to addons and doesn't checkout to another branch.

My guess here is that submodule hash in master and branch was different and having hash modified in master somehow prevented changes from another branch to be checked out. In this case question would be: what would be the proper way to checkout branches when having submodules configured this way?

Second issue is that some developers still manages to commit changes to submodule hash, which i have totally no idea why Git allows to include such a changes. I could not do such a commits on purpose even.

Here're some links to help understanding what's going on:

- Blender repository browser: http://developer.blender.org/diffusion/B/
- Task in our tracker about issues we've got with Git:
http://developer.blender.org/T37528
- History of changes to addons hash:
http://developer.blender.org/diffusion/B/history/master/release/scripts/addons

We're totally new to git submodules and clarification (and maybe even confirmed bug with ls-files -m :) would really be appreciated. We're also open for suggestions about re-configuring our submodules so they works in a way we'd expect this.

Thanks in advance!