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Re: [PATCH v3 09/20] commit-graph: verify corrupt OID fanout and lookup

From
Jakub Narebski <jnareb@gmail.com>
Date
May 30, 2018, 13:34 UTC
Message-ID
<86in75w9m9.fsf@gmail.com>
In-Reply-To
<20180524162504.158394-10-dstolee@microsoft.com>
Derrick Stolee <dstolee@microsoft.com> writes:
Show 6 quoted lines
> In the commit-graph file, the OID fanout chunk provides an index into
> the OID lookup. The 'verify' subcommand should find incorrect values
> in the fanout.
>
> Similarly, the 'verify' subcommand should find out-of-order values in
> the OID lookup.

O.K., the OID Lookup chunk is checked together with OID Fanout chunk because those two chunks are tightly connected: OID Fanout is fanout into OID Lookup.

Show 17 quoted lines
>
> Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
> ---
>  commit-graph.c          | 36 ++++++++++++++++++++++++++++++++++++
>  t/t5318-commit-graph.sh | 22 ++++++++++++++++++++++
>  2 files changed, 58 insertions(+)
>
> diff --git a/commit-graph.c b/commit-graph.c
> index 06e3e4f9ba..cbd1aae514 100644
> --- a/commit-graph.c
> +++ b/commit-graph.c
> @@ -855,6 +855,9 @@ static void graph_report(const char *fmt, ...)
>  
>  int verify_commit_graph(struct commit_graph *g)
>  {
> +	uint32_t i, cur_fanout_pos = 0;
> +	struct object_id prev_oid, cur_oid;
Minor nitpick about the naming convention: why cur_*, and not curr_*?
Show 11 quoted lines
> +
>  	if (!g) {
>  		graph_report("no commit-graph file loaded");
>  		return 1;
> @@ -869,5 +872,38 @@ int verify_commit_graph(struct commit_graph *g)
>  	if (!g->chunk_commit_data)
>  		graph_report("commit-graph is missing the Commit Data chunk");
>  
> +	if (verify_commit_graph_error)
> +		return verify_commit_graph_error;
> +

Before checking that commits in OID Lookup are sorted, and that OID Fanout correctly points into OID Lookup (thus also checking that OID Lookup is sorted), it would be good to verify that sizes of those chunks are correct.

Out of 4 standrd chunks, 1 of them (OIDF) has constant size, and 2 of
them have size given by number of commits and hash size
 - OID Fanout is (256 * 4 bytes)
 - OID Lookup is (N * H bytes),
   where N is number of commits, and H is hash size

The one that is more significant is if number of commits gets corrupted upwards, and walking through OID Lookup would lead us out of bounds, outside the file size.

IIRC we have checked that all chunks fit within file size, isn't it?
> +	for (i = 0; i < g->num_commits; i++) {
> +		hashcpy(cur_oid.hash, g->chunk_oid_lookup + g->hash_len * i);
Why do you use hashcpy() here, but oidcpy() below?
> +
> +		if (i && oidcmp(&prev_oid, &cur_oid) >= 0)

All right, OIDs needs to be sorted in ascending lexicographical order, and the above condition checks that this constraint is fullfilled.

> +			graph_report("commit-graph has incorrect OID order: %s then %s",
> +				     oid_to_hex(&prev_oid),
> +				     oid_to_hex(&cur_oid));
Nice informative error message.
Show 11 quoted lines
> +
> +		oidcpy(&prev_oid, &cur_oid);
> +
> +		while (cur_oid.hash[0] > cur_fanout_pos) {
> +			uint32_t fanout_value = get_be32(g->chunk_oid_fanout + cur_fanout_pos);
> +			if (i != fanout_value)
> +				graph_report("commit-graph has incorrect fanout value: fanout[%d] = %u != %u",
> +					     cur_fanout_pos, fanout_value, i);
> +
> +			cur_fanout_pos++;
> +		}

The k-th entry of fanout, F[k], stores the number of OIDs with first byte at most k.

Let's examine it in detail on a simple example:
   fanout                     lookup
   ------                     ------
   0 : 0  ---------------> 0: 1xxxx....
   1 : 2  -----\           1: 1yyyy....
   2 : 2  ------\--------> 2: 3xxxx....
   3 : 3  ---------------> 3: 4xxxx....

We are checking that after most significant byte (first byte) changes, then all fanout position up to the current first byte value (exclusive) point to current position in OID Lookup chunk.

Seems all right; it would be nice to come up with rigorous proof that it is all right.

Show 11 quoted lines
> +	}
> +
> +	while (cur_fanout_pos < 256) {
> +		uint32_t fanout_value = get_be32(g->chunk_oid_fanout + cur_fanout_pos);
> +
> +		if (g->num_commits != fanout_value)
> +			graph_report("commit-graph has incorrect fanout value: fanout[%d] = %u != %u",
> +				     cur_fanout_pos, fanout_value, i);
> +
> +		cur_fanout_pos++;
> +	}

All right, this checks that all remaining fanout entries, up and including the 255-ith entry store the total number of commits, N.

Show 25 quoted lines
> +
>  	return verify_commit_graph_error;
>  }
> diff --git a/t/t5318-commit-graph.sh b/t/t5318-commit-graph.sh
> index 4ef3fe3dc2..c050ef980b 100755
> --- a/t/t5318-commit-graph.sh
> +++ b/t/t5318-commit-graph.sh
> @@ -247,6 +247,7 @@ test_expect_success 'git commit-graph verify' '
>  	git commit-graph verify >output
>  '
>  
> +HASH_LEN=20
>  GRAPH_BYTE_VERSION=4
>  GRAPH_BYTE_HASH=5
>  GRAPH_BYTE_CHUNK_COUNT=6
> @@ -258,6 +259,12 @@ GRAPH_BYTE_OID_LOOKUP_ID=`expr $GRAPH_CHUNK_LOOKUP_OFFSET + \
>  			      1 \* $GRAPH_CHUNK_LOOKUP_WIDTH`
>  GRAPH_BYTE_COMMIT_DATA_ID=`expr $GRAPH_CHUNK_LOOKUP_OFFSET + \
>  				2 \* $GRAPH_CHUNK_LOOKUP_WIDTH`
> +GRAPH_FANOUT_OFFSET=`expr $GRAPH_CHUNK_LOOKUP_OFFSET + \
> +			  $GRAPH_CHUNK_LOOKUP_WIDTH \* $GRAPH_CHUNK_LOOKUP_ROWS`
> +GRAPH_BYTE_FANOUT1=`expr $GRAPH_FANOUT_OFFSET + 4 \* 4`
> +GRAPH_BYTE_FANOUT2=`expr $GRAPH_FANOUT_OFFSET + 4 \* 255`
> +GRAPH_OID_LOOKUP_OFFSET=`expr $GRAPH_FANOUT_OFFSET + 4 \* 256`
> +GRAPH_BYTE_OID_LOOKUP_ORDER=`expr $GRAPH_OID_LOOKUP_OFFSET + $HASH_LEN \* 8`
Something that I forgot to write about in previous patch.

POSIX shell includes $(( ... )) for arithmetic expansion, there is nowadays no need to use $(expr ...), and even more no need to use pre-POSIX `expr ...`.

TLDR: use $(( ... )), not `expr ... `.
Show 9 quoted lines
>  
>  # usage: corrupt_graph_and_verify <position> <data> <string>
>  # Manipulates the commit-graph file at the position
> @@ -312,4 +319,19 @@ test_expect_success 'detect missing commit data chunk' '
>  		"missing the Commit Data chunk"
>  '
>  
> +test_expect_success 'detect incorrect fanout' '
> +	corrupt_graph_and_verify $GRAPH_BYTE_FANOUT1 "\01" \
How can you be sure that this value is incorrect?
Show 7 quoted lines
> +		"fanout value"
> +'
> +
> +test_expect_success 'detect incorrect fanout' '
> +	corrupt_graph_and_verify $GRAPH_BYTE_FANOUT2 "\01" \
> +		"fanout value"
> +'

I would prefer if different tests had different description. Those two are both 'detect incorrect layout'. What is the difference between them?

Show 5 quoted lines
> +
> +test_expect_success 'detect incorrect OID order' '
> +	corrupt_graph_and_verify $GRAPH_BYTE_OID_LOOKUP_ORDER "\01" \
> +		"incorrect OID order"
> +'

How can you be sure that this value is incorrect, or rather that it would be always incorrect?

> +
>  test_done
-- 
Jakub Narębski
Previous: Derrick StoleeNext: Derrick Stolee
Message 108 of 149 in “Integrate commit-graph into 'fsck' and 'gc'”
  1. 00/12 Integrate commit-graph into 'fsck' and 'gc'Derrick Stolee, Apr 17, 2018
  2. 01/12 fixup! commit-graph: always load commit-graph informationDerrick Stolee, Apr 17, 2018
  3. 04/12 commit-graph: parse commit from chosen graphDerrick Stolee, Apr 17, 2018
  4. Jakub NarebskiApr 19, 2018
  5. 06/12 commit: force commit to parse from object databaseDerrick Stolee, Apr 17, 2018
  6. Jakub NarebskiApr 20, 2018
  7. 07/12 commit-graph: load a root tree from specific graphDerrick Stolee, Apr 17, 2018
  8. Jakub NarebskiApr 20, 2018
  9. 10/12 commit-graph: add '--reachable' optionDerrick Stolee, Apr 17, 2018
  10. Jakub NarebskiApr 20, 2018
  11. 12/12 commit-graph: update design documentDerrick Stolee, Apr 17, 2018
  12. Jakub NarebskiApr 20, 2018
  13. 11/12 gc: automatically write commit-graph filesDerrick Stolee, Apr 17, 2018
  14. Jakub NarebskiApr 20, 2018
  15. Ævar Arnfjörð BjarmasonApr 20, 2018
  16. 09/12 fsck: check commit-graphDerrick Stolee, Apr 17, 2018
  17. Jakub NarebskiApr 20, 2018
  18. 08/12 commit-graph: verify commit contents against odbDerrick Stolee, Apr 17, 2018
  19. Jakub NarebskiApr 20, 2018
  20. 02/12 commit-graph: add 'check' subcommandDerrick Stolee, Apr 17, 2018
  21. Jakub NarebskiApr 19, 2018
  22. 03/12 commit-graph: check file header informationDerrick Stolee, Apr 17, 2018
  23. Jakub NarebskiApr 19, 2018
  24. 05/12 commit-graph: check fanout and lookup tableDerrick Stolee, Apr 17, 2018
  25. Jakub NarebskiApr 20, 2018
  26. Derrick StoleeApr 17, 2018
  27. 00/12 Integrate commit-graph into fsck, gc, and fetchDerrick Stolee, May 10, 2018
  28. 01/12 commit-graph: add 'verify' subcommandDerrick Stolee, May 10, 2018
  29. Martin ÅgrenMay 10, 2018
  30. 02/12 commit-graph: verify file header informationDerrick Stolee, May 10, 2018
  31. Martin ÅgrenMay 10, 2018
  32. 04/12 commit-graph: verify fanout and lookup tableDerrick Stolee, May 10, 2018
  33. Martin ÅgrenMay 10, 2018
  34. Derrick StoleeMay 11, 2018
  35. 06/12 commit-graph: load a root tree from specific graphDerrick Stolee, May 10, 2018
  36. 08/12 fsck: verify commit-graphDerrick Stolee, May 10, 2018
  37. 12/12 commit-graph: update design documentDerrick Stolee, May 10, 2018
  38. 11/12 fetch: compute commit-graph by defaultDerrick Stolee, May 10, 2018
  39. 07/12 commit-graph: verify commit contents against odbDerrick Stolee, May 10, 2018
  40. 09/12 commit-graph: add '--reachable' optionDerrick Stolee, May 10, 2018
  41. 10/12 gc: automatically write commit-graph filesDerrick Stolee, May 10, 2018
  42. 05/12 commit: force commit to parse from object databaseDerrick Stolee, May 10, 2018
  43. 03/12 commit-graph: parse commit from chosen graphDerrick Stolee, May 10, 2018
  44. Martin ÅgrenMay 10, 2018
  45. Stefan BellerMay 10, 2018
  46. Derrick StoleeMay 11, 2018
  47. Martin ÅgrenMay 11, 2018
  48. Ævar Arnfjörð BjarmasonMay 10, 2018
  49. Derrick StoleeMay 11, 2018
  50. 00/12 Integrate commit-graph into fsck and gcDerrick Stolee, May 11, 2018
  51. 02/12 commit-graph: verify file header informationDerrick Stolee, May 11, 2018
  52. Martin ÅgrenMay 12, 2018
  53. Derrick StoleeMay 14, 2018
  54. Jakub NarebskiMay 20, 2018
  55. 01/12 commit-graph: add 'verify' subcommandDerrick Stolee, May 11, 2018
  56. Martin ÅgrenMay 12, 2018
  57. Derrick StoleeMay 14, 2018
  58. Jakub NarebskiMay 20, 2018
  59. 03/12 commit-graph: test that 'verify' finds corruptionDerrick Stolee, May 11, 2018
  60. Martin ÅgrenMay 12, 2018
  61. Jakub NarebskiMay 21, 2018
  62. Derrick StoleeMay 24, 2018
  63. 04/12 commit-graph: parse commit from chosen graphDerrick Stolee, May 11, 2018
  64. Martin ÅgrenMay 12, 2018
  65. 05/12 commit-graph: verify fanout and lookup tableDerrick Stolee, May 11, 2018
  66. 06/12 commit: force commit to parse from object databaseDerrick Stolee, May 11, 2018
  67. Martin ÅgrenMay 12, 2018
  68. 09/12 fsck: verify commit-graphDerrick Stolee, May 11, 2018
  69. Martin ÅgrenMay 17, 2018
  70. 11/12 gc: automatically write commit-graph filesDerrick Stolee, May 11, 2018
  71. Martin ÅgrenMay 17, 2018
  72. 12/12 commit-graph: update design documentDerrick Stolee, May 11, 2018
  73. 07/12 commit-graph: load a root tree from specific graphDerrick Stolee, May 11, 2018
  74. Martin ÅgrenMay 12, 2018
  75. 08/12 commit-graph: verify commit contents against odbDerrick Stolee, May 11, 2018
  76. Martin ÅgrenMay 12, 2018
  77. Derrick StoleeMay 14, 2018
  78. Martin ÅgrenMay 15, 2018
  79. 10/12 commit-graph: add '--reachable' optionDerrick Stolee, May 11, 2018
  80. Martin ÅgrenMay 17, 2018
  81. 00/20 Integrate commit-graph into 'fsck' and 'gc'Derrick Stolee, May 24, 2018
  82. 01/20 commit-graph: UNLEAK before die()Derrick Stolee, May 24, 2018
  83. Stefan BellerMay 24, 2018
  84. Derrick StoleeMay 25, 2018
  85. 04/20 commit: force commit to parse from object databaseDerrick Stolee, May 24, 2018
  86. Jakub NarebskiMay 27, 2018
  87. 03/20 commit-graph: parse commit from chosen graphDerrick Stolee, May 24, 2018
  88. Jakub NarebskiMay 27, 2018
  89. Derrick StoleeMay 29, 2018
  90. 06/20 commit-graph: add 'verify' subcommandDerrick Stolee, May 24, 2018
  91. Jakub NarebskiMay 27, 2018
  92. Derrick StoleeMay 30, 2018
  93. Jakub NarebskiJun 2, 2018
  94. Derrick StoleeJun 4, 2018
  95. 07/20 commit-graph: verify catches corrupt signatureDerrick Stolee, May 24, 2018
  96. Jakub NarebskiMay 28, 2018
  97. Derrick StoleeMay 29, 2018
  98. Jakub NarebskiJun 2, 2018
  99. 05/20 commit-graph: load a root tree from specific graphDerrick Stolee, May 24, 2018
  100. Jakub NarebskiMay 27, 2018
  101. 08/20 commit-graph: verify required chunks are presentDerrick Stolee, May 24, 2018
  102. Jakub NarebskiMay 28, 2018
  103. 02/20 commit-graph: fix GRAPH_MIN_SIZEDerrick Stolee, May 24, 2018
  104. Jakub NarebskiMay 26, 2018
  105. brian m. carlsonMay 26, 2018
  106. Jakub NarebskiJun 2, 2018
  107. 09/20 commit-graph: verify corrupt OID fanout and lookupDerrick Stolee, May 24, 2018
  108. Jakub NarebskiMay 30, 2018
  109. Derrick StoleeMay 30, 2018
  110. Duy NguyenJun 2, 2018
  111. Derrick StoleeJun 4, 2018
  112. Duy NguyenJun 4, 2018
  113. 10/20 commit-graph: verify objects existDerrick Stolee, May 24, 2018
  114. Jakub NarebskiMay 30, 2018
  115. Derrick StoleeMay 31, 2018
  116. 11/20 commit-graph: verify root tree OIDsDerrick Stolee, May 24, 2018
  117. Jakub NarebskiMay 30, 2018
  118. Derrick StoleeMay 31, 2018
  119. Jakub NarebskiJun 2, 2018
  120. 12/20 commit-graph: verify parent listDerrick Stolee, May 24, 2018
  121. Jakub NarebskiJun 1, 2018
  122. 14/20 commit-graph: verify commit dateDerrick Stolee, May 24, 2018
  123. Jakub NarebskiJun 2, 2018
  124. 16/20 commit-graph: verify contents match checksumDerrick Stolee, May 24, 2018
  125. SZEDER GáborMay 30, 2018
  126. Jakub NarebskiJun 2, 2018
  127. Derrick StoleeJun 4, 2018
  128. 19/20 gc: automatically write commit-graph filesDerrick Stolee, May 24, 2018
  129. Jakub NarebskiJun 2, 2018
  130. Derrick StoleeJun 4, 2018
  131. 20/20 commit-graph: update design documentDerrick Stolee, May 24, 2018
  132. Jakub NarebskiJun 2, 2018
  133. 17/20 fsck: verify commit-graphDerrick Stolee, May 24, 2018
  134. Jakub NarebskiJun 2, 2018
  135. Derrick StoleeJun 4, 2018
  136. 15/20 commit-graph: test for corrupted octopus edgeDerrick Stolee, May 24, 2018
  137. Jakub NarebskiJun 2, 2018
  138. Derrick StoleeJun 4, 2018
  139. 18/20 commit-graph: add '--reachable' optionDerrick Stolee, May 24, 2018
  140. Jakub NarebskiJun 2, 2018
  141. Derrick StoleeJun 4, 2018
  142. 13/20 commit-graph: verify generation numberDerrick Stolee, May 24, 2018
  143. Jakub NarebskiJun 2, 2018
  144. Derrick StoleeJun 4, 2018
  145. Ævar Arnfjörð BjarmasonMay 24, 2018
  146. Junio C HamanoMay 25, 2018
  147. Junio C HamanoMay 29, 2018
  148. Derrick StoleeMay 29, 2018
  149. Junio C HamanoMay 29, 2018

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