git/list[1] front-page[2] threads[3] people[4] search[5] about
 

Re: [PATCH v3 10/20] commit-graph: verify objects exist

From
Derrick Stolee <stolee@gmail.com>
Date
May 31, 2018, 12:53 UTC
Message-ID
<7876b157-6730-53ae-d1c9-102df1a16331@gmail.com>
In-Reply-To
<86a7shvth6.fsf@gmail.com>
On 5/30/2018 3:22 PM, Jakub Narebski wrote:
Show 31 quoted lines
> Derrick Stolee <dstolee@microsoft.com> writes:
>
>> In the 'verify' subcommand, load commits directly from the object
>> database to ensure they exist. Parse by skipping the commit-graph.
> All right, before we check that the commit data matches, we need to
> check that all the commits in cache (in the serialized commit graph) are
> present in real data (in the object database of the repository).
>
> What's nice of this series is that the operation that actually removes
> unreachable commits from the object database, that is `git gc`, would
> also update commit-gaph file.
>
>> Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
>> ---
>>   commit-graph.c          | 20 ++++++++++++++++++++
>>   t/t5318-commit-graph.sh |  7 +++++++
>>   2 files changed, 27 insertions(+)
>>
>> diff --git a/commit-graph.c b/commit-graph.c
>> index cbd1aae514..0420ebcd87 100644
>> --- a/commit-graph.c
>> +++ b/commit-graph.c
>> @@ -238,6 +238,10 @@ static struct commit_list **insert_parent_or_die(struct commit_graph *g,
>>   {
>>   	struct commit *c;
>>   	struct object_id oid;
>> +
>> +	if (pos >= g->num_commits)
>> +		die("invalid parent position %"PRIu64, pos);
>> +
> This change is not described in the commit message.

This change should go in "commit-graph: verify parent list" which adds a test that fails without it. Thanks.

Show 100 quoted lines
>>   	hashcpy(oid.hash, g->chunk_oid_lookup + g->hash_len * pos);
>>   	c = lookup_commit(&oid);
>>   	if (!c)
>> @@ -905,5 +909,21 @@ int verify_commit_graph(struct commit_graph *g)
>>   		cur_fanout_pos++;
>>   	}
>>   
>> +	if (verify_commit_graph_error)
>> +		return verify_commit_graph_error;
> All right, so we by default short-circuit so that errors found earlier
> wouldn't cause crash when checking other things.
>
> Is it needed, though, in this case?  Though I guess it is better to be
> conservative; lso by terminating after a batch of one type of errors we
> don't get many different error messages from the same error (i.e. error
> propagation).
>
>> +
>> +	for (i = 0; i < g->num_commits; i++) {
>> +		struct commit *odb_commit;
>> +
>> +		hashcpy(cur_oid.hash, g->chunk_oid_lookup + g->hash_len * i);
>> +
>> +		odb_commit = (struct commit *)create_object(cur_oid.hash, alloc_commit_node());
> Do we really need to keep all those commits from the object database in
> memory (in the object::obj_hash hash table)?  Perhaps using something
> like Flywheel / Recycler pattern would be a better solution (if
> possible)?
>
> Though perhaps this doesn't matter much with respect to memory use.
>
>> +		if (parse_commit_internal(odb_commit, 0, 0)) {
> Just a reminder to myself: the signature is
>
>    int parse_commit_internal(struct commit *item, int quiet_on_missing, int use_commit_graph)
>
>
> Hmmm... I wonder if with two boolean paramaters wouldn't it be better to
> use flags parameter, i.e.
>
>    int parse_commit_internal(struct commit *item, int flags)
>
>    ...
>
>    parse_commit_internal(commit, QUIET_ON_MISSING | USE_COMMIT_GRAPH)
>
> But I guess that it is not worth it (especially for internal-ish
> function).
>
>> +			graph_report("failed to parse %s from object database",
>> +				     oid_to_hex(&cur_oid));
> Wouldn't parse_commit_internal() show it's own error message, in
> addition to the one above?
>
>> +			continue;
>> +		}
>> +	}
>> +
>>   	return verify_commit_graph_error;
>>   }
>> diff --git a/t/t5318-commit-graph.sh b/t/t5318-commit-graph.sh
>> index c050ef980b..996a016239 100755
>> --- a/t/t5318-commit-graph.sh
>> +++ b/t/t5318-commit-graph.sh
>> @@ -247,6 +247,7 @@ test_expect_success 'git commit-graph verify' '
>>   	git commit-graph verify >output
>>   '
>>   
>> +NUM_COMMITS=9
>>   HASH_LEN=20
>>   GRAPH_BYTE_VERSION=4
>>   GRAPH_BYTE_HASH=5
>> @@ -265,6 +266,7 @@ GRAPH_BYTE_FANOUT1=`expr $GRAPH_FANOUT_OFFSET + 4 \* 4`
>>   GRAPH_BYTE_FANOUT2=`expr $GRAPH_FANOUT_OFFSET + 4 \* 255`
>>   GRAPH_OID_LOOKUP_OFFSET=`expr $GRAPH_FANOUT_OFFSET + 4 \* 256`
>>   GRAPH_BYTE_OID_LOOKUP_ORDER=`expr $GRAPH_OID_LOOKUP_OFFSET + $HASH_LEN \* 8`
>> +GRAPH_BYTE_OID_LOOKUP_MISSING=`expr $GRAPH_OID_LOOKUP_OFFSET + $HASH_LEN \* 4 + 10`
> All right, so we modify 10-the byte of OID of 5-th commit out of 9,
> am I correct here?
>
>>   
>>   # usage: corrupt_graph_and_verify <position> <data> <string>
>>   # Manipulates the commit-graph file at the position
>> @@ -334,4 +336,9 @@ test_expect_success 'detect incorrect OID order' '
>>   		"incorrect OID order"
>>   '
>>   
>> +test_expect_success 'detect OID not in object database' '
>> +	corrupt_graph_and_verify $GRAPH_BYTE_OID_LOOKUP_MISSING "\01" \
>> +		"from object database"
>> +'
> I guess that if we ensure that OIDs are constant, you have chosen the
> change to actually corrupt the OID in OID Lookup chunk to point to OID
> that is not in the object database (while still not violating the
> constraint that OID in OID Lookup chunk needs to be sorted).
>
>> +
>>   test_done
> All right (well, except for `expr ... ` --> $(( ... )) change).
>
Previous: Jakub NarebskiNext: Derrick Stolee
Message 115 of 149 in “Integrate commit-graph into 'fsck' and 'gc'”
  1. 00/12 Integrate commit-graph into 'fsck' and 'gc'Derrick Stolee, Apr 17, 2018
  2. 01/12 fixup! commit-graph: always load commit-graph informationDerrick Stolee, Apr 17, 2018
  3. 04/12 commit-graph: parse commit from chosen graphDerrick Stolee, Apr 17, 2018
  4. Jakub NarebskiApr 19, 2018
  5. 06/12 commit: force commit to parse from object databaseDerrick Stolee, Apr 17, 2018
  6. Jakub NarebskiApr 20, 2018
  7. 07/12 commit-graph: load a root tree from specific graphDerrick Stolee, Apr 17, 2018
  8. Jakub NarebskiApr 20, 2018
  9. 10/12 commit-graph: add '--reachable' optionDerrick Stolee, Apr 17, 2018
  10. Jakub NarebskiApr 20, 2018
  11. 12/12 commit-graph: update design documentDerrick Stolee, Apr 17, 2018
  12. Jakub NarebskiApr 20, 2018
  13. 11/12 gc: automatically write commit-graph filesDerrick Stolee, Apr 17, 2018
  14. Jakub NarebskiApr 20, 2018
  15. Ævar Arnfjörð BjarmasonApr 20, 2018
  16. 09/12 fsck: check commit-graphDerrick Stolee, Apr 17, 2018
  17. Jakub NarebskiApr 20, 2018
  18. 08/12 commit-graph: verify commit contents against odbDerrick Stolee, Apr 17, 2018
  19. Jakub NarebskiApr 20, 2018
  20. 02/12 commit-graph: add 'check' subcommandDerrick Stolee, Apr 17, 2018
  21. Jakub NarebskiApr 19, 2018
  22. 03/12 commit-graph: check file header informationDerrick Stolee, Apr 17, 2018
  23. Jakub NarebskiApr 19, 2018
  24. 05/12 commit-graph: check fanout and lookup tableDerrick Stolee, Apr 17, 2018
  25. Jakub NarebskiApr 20, 2018
  26. Derrick StoleeApr 17, 2018
  27. 00/12 Integrate commit-graph into fsck, gc, and fetchDerrick Stolee, May 10, 2018
  28. 01/12 commit-graph: add 'verify' subcommandDerrick Stolee, May 10, 2018
  29. Martin ÅgrenMay 10, 2018
  30. 02/12 commit-graph: verify file header informationDerrick Stolee, May 10, 2018
  31. Martin ÅgrenMay 10, 2018
  32. 04/12 commit-graph: verify fanout and lookup tableDerrick Stolee, May 10, 2018
  33. Martin ÅgrenMay 10, 2018
  34. Derrick StoleeMay 11, 2018
  35. 06/12 commit-graph: load a root tree from specific graphDerrick Stolee, May 10, 2018
  36. 08/12 fsck: verify commit-graphDerrick Stolee, May 10, 2018
  37. 12/12 commit-graph: update design documentDerrick Stolee, May 10, 2018
  38. 11/12 fetch: compute commit-graph by defaultDerrick Stolee, May 10, 2018
  39. 07/12 commit-graph: verify commit contents against odbDerrick Stolee, May 10, 2018
  40. 09/12 commit-graph: add '--reachable' optionDerrick Stolee, May 10, 2018
  41. 10/12 gc: automatically write commit-graph filesDerrick Stolee, May 10, 2018
  42. 05/12 commit: force commit to parse from object databaseDerrick Stolee, May 10, 2018
  43. 03/12 commit-graph: parse commit from chosen graphDerrick Stolee, May 10, 2018
  44. Martin ÅgrenMay 10, 2018
  45. Stefan BellerMay 10, 2018
  46. Derrick StoleeMay 11, 2018
  47. Martin ÅgrenMay 11, 2018
  48. Ævar Arnfjörð BjarmasonMay 10, 2018
  49. Derrick StoleeMay 11, 2018
  50. 00/12 Integrate commit-graph into fsck and gcDerrick Stolee, May 11, 2018
  51. 02/12 commit-graph: verify file header informationDerrick Stolee, May 11, 2018
  52. Martin ÅgrenMay 12, 2018
  53. Derrick StoleeMay 14, 2018
  54. Jakub NarebskiMay 20, 2018
  55. 01/12 commit-graph: add 'verify' subcommandDerrick Stolee, May 11, 2018
  56. Martin ÅgrenMay 12, 2018
  57. Derrick StoleeMay 14, 2018
  58. Jakub NarebskiMay 20, 2018
  59. 03/12 commit-graph: test that 'verify' finds corruptionDerrick Stolee, May 11, 2018
  60. Martin ÅgrenMay 12, 2018
  61. Jakub NarebskiMay 21, 2018
  62. Derrick StoleeMay 24, 2018
  63. 04/12 commit-graph: parse commit from chosen graphDerrick Stolee, May 11, 2018
  64. Martin ÅgrenMay 12, 2018
  65. 05/12 commit-graph: verify fanout and lookup tableDerrick Stolee, May 11, 2018
  66. 06/12 commit: force commit to parse from object databaseDerrick Stolee, May 11, 2018
  67. Martin ÅgrenMay 12, 2018
  68. 09/12 fsck: verify commit-graphDerrick Stolee, May 11, 2018
  69. Martin ÅgrenMay 17, 2018
  70. 11/12 gc: automatically write commit-graph filesDerrick Stolee, May 11, 2018
  71. Martin ÅgrenMay 17, 2018
  72. 12/12 commit-graph: update design documentDerrick Stolee, May 11, 2018
  73. 07/12 commit-graph: load a root tree from specific graphDerrick Stolee, May 11, 2018
  74. Martin ÅgrenMay 12, 2018
  75. 08/12 commit-graph: verify commit contents against odbDerrick Stolee, May 11, 2018
  76. Martin ÅgrenMay 12, 2018
  77. Derrick StoleeMay 14, 2018
  78. Martin ÅgrenMay 15, 2018
  79. 10/12 commit-graph: add '--reachable' optionDerrick Stolee, May 11, 2018
  80. Martin ÅgrenMay 17, 2018
  81. 00/20 Integrate commit-graph into 'fsck' and 'gc'Derrick Stolee, May 24, 2018
  82. 01/20 commit-graph: UNLEAK before die()Derrick Stolee, May 24, 2018
  83. Stefan BellerMay 24, 2018
  84. Derrick StoleeMay 25, 2018
  85. 04/20 commit: force commit to parse from object databaseDerrick Stolee, May 24, 2018
  86. Jakub NarebskiMay 27, 2018
  87. 03/20 commit-graph: parse commit from chosen graphDerrick Stolee, May 24, 2018
  88. Jakub NarebskiMay 27, 2018
  89. Derrick StoleeMay 29, 2018
  90. 06/20 commit-graph: add 'verify' subcommandDerrick Stolee, May 24, 2018
  91. Jakub NarebskiMay 27, 2018
  92. Derrick StoleeMay 30, 2018
  93. Jakub NarebskiJun 2, 2018
  94. Derrick StoleeJun 4, 2018
  95. 07/20 commit-graph: verify catches corrupt signatureDerrick Stolee, May 24, 2018
  96. Jakub NarebskiMay 28, 2018
  97. Derrick StoleeMay 29, 2018
  98. Jakub NarebskiJun 2, 2018
  99. 05/20 commit-graph: load a root tree from specific graphDerrick Stolee, May 24, 2018
  100. Jakub NarebskiMay 27, 2018
  101. 08/20 commit-graph: verify required chunks are presentDerrick Stolee, May 24, 2018
  102. Jakub NarebskiMay 28, 2018
  103. 02/20 commit-graph: fix GRAPH_MIN_SIZEDerrick Stolee, May 24, 2018
  104. Jakub NarebskiMay 26, 2018
  105. brian m. carlsonMay 26, 2018
  106. Jakub NarebskiJun 2, 2018
  107. 09/20 commit-graph: verify corrupt OID fanout and lookupDerrick Stolee, May 24, 2018
  108. Jakub NarebskiMay 30, 2018
  109. Derrick StoleeMay 30, 2018
  110. Duy NguyenJun 2, 2018
  111. Derrick StoleeJun 4, 2018
  112. Duy NguyenJun 4, 2018
  113. 10/20 commit-graph: verify objects existDerrick Stolee, May 24, 2018
  114. Jakub NarebskiMay 30, 2018
  115. Derrick StoleeMay 31, 2018
  116. 11/20 commit-graph: verify root tree OIDsDerrick Stolee, May 24, 2018
  117. Jakub NarebskiMay 30, 2018
  118. Derrick StoleeMay 31, 2018
  119. Jakub NarebskiJun 2, 2018
  120. 12/20 commit-graph: verify parent listDerrick Stolee, May 24, 2018
  121. Jakub NarebskiJun 1, 2018
  122. 14/20 commit-graph: verify commit dateDerrick Stolee, May 24, 2018
  123. Jakub NarebskiJun 2, 2018
  124. 16/20 commit-graph: verify contents match checksumDerrick Stolee, May 24, 2018
  125. SZEDER GáborMay 30, 2018
  126. Jakub NarebskiJun 2, 2018
  127. Derrick StoleeJun 4, 2018
  128. 19/20 gc: automatically write commit-graph filesDerrick Stolee, May 24, 2018
  129. Jakub NarebskiJun 2, 2018
  130. Derrick StoleeJun 4, 2018
  131. 20/20 commit-graph: update design documentDerrick Stolee, May 24, 2018
  132. Jakub NarebskiJun 2, 2018
  133. 17/20 fsck: verify commit-graphDerrick Stolee, May 24, 2018
  134. Jakub NarebskiJun 2, 2018
  135. Derrick StoleeJun 4, 2018
  136. 15/20 commit-graph: test for corrupted octopus edgeDerrick Stolee, May 24, 2018
  137. Jakub NarebskiJun 2, 2018
  138. Derrick StoleeJun 4, 2018
  139. 18/20 commit-graph: add '--reachable' optionDerrick Stolee, May 24, 2018
  140. Jakub NarebskiJun 2, 2018
  141. Derrick StoleeJun 4, 2018
  142. 13/20 commit-graph: verify generation numberDerrick Stolee, May 24, 2018
  143. Jakub NarebskiJun 2, 2018
  144. Derrick StoleeJun 4, 2018
  145. Ævar Arnfjörð BjarmasonMay 24, 2018
  146. Junio C HamanoMay 25, 2018
  147. Junio C HamanoMay 29, 2018
  148. Derrick StoleeMay 29, 2018
  149. Junio C HamanoMay 29, 2018

Read the whole thread, see it on lore, or plain text.

$ cat FOOTERMessages come from the public archive at lore.kernel.org/git, fetched every hour. The front page is chosen and written each morning by an AI editor and can be wrong; the threads themselves are the record. About and API. For agents: an MCP server at https://gitlist.dev/mcp, and any thread, story or person page as Markdown by adding .md to its URL (or sending Accept: text/markdown). Details in /llms.txt.