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Re: [PATCH 2/3] sparse-checkout: add 'clean' command

From
Derrick Stolee <stolee@gmail.com>
Date
Jul 15, 2025, 13:38 UTC
Message-ID
<1af54798-12d0-4ff4-978c-254d9d0312b6@gmail.com>
In-Reply-To
<CABPp-BFO3Mx9LHPxjbdm2ayvfs2gx9nC9vJnW=zuARgCYrQzNQ@mail.gmail.com>
On 7/9/2025 1:35 PM, Elijah Newren wrote:
> On Wed, Jul 9, 2025 at 9:13 AM Derrick Stolee <stolee@gmail.com> wrote:
>>
>> On 7/8/2025 5:43 PM, Elijah Newren wrote:
Show 20 quoted lines
>>>> +                                                    This subcommand requires cone-mode
>>>> +       sparse-checkout to be sure that we know which directories are
>>>> +       both tracked and all contained paths are not in the sparse-checkout.
>>>> +       This command can be used to be sure the sparse index works
>>>> +       efficiently.
>>>
>>> So...what does it do when in cone mode and the sparse index is not enabled?
>>
>> It doesn't effect the behavior, since we don't care about the on-disk
>> format and instead use an in-memory sparse index to determine which
>> directories to delete.
>>
>> There could be a benefit for users wanting to clean up extra files in
>> their worktree even if they are not using a sparse index. It is less
>> likely that they will discover that they are in that state if they
>> are not pestered by the index expansion advice message.
> 
> Right, for cone mode without the sparse index turned on, this new
> subcommand seems to be a silent no-op (other than burning some
> computation time),

No, it works without the sparse index off. The sparse index config is about whether or not Git _writes_ the index in the sparse format.

This command works even if the sparse index is not enabled for the written format, since we can manipulate the in-memory index for the purpose of discovering which tracked directories should be sparse and thus not in the worktree.

Show 6 quoted lines
> despite the fact that the wording in the manual> might lead users to believe it will do some nice tidying for them.
> When the command spends some time working but doesn't do anything and
> doesn't report anything, the user might then think the command is just
> buggy.  I think the command should probably either (a) do some tidying
> for them, or (b) give them a warning that the command has no effect
> when sparse index is not turned on.  Thoughts?

So your concerns here should not be a problem, since the command _does_ do the expected action even if index.sparse=false.

Show 26 quoted lines
>>> I'm worried whether this is safe; if someone does a merge or rebase,
>>> there could be tracked-and-modified/conflicted files outside the
>>> sparse specification in the working tree.
>>
>> The conflicted files will not collapse to sparse directory entries.
>>
>> Does that ease your concern on that front?
> 
> Yes, that does ease my concerns...but it doesn't erase them.
> 
> If someone resolves the conflicted merge or rebase and commits (long
> before running this `git sparse-checkout clean` command), what happens
> to those paths?  Do these materialized paths persist in the worktree
> after the commit?  I know they did at some point in our
> implementation, and the current wording of `git sparse-checkout
> reapply` in the manual certainly suggests such paths may stick around
> until the user takes manual action:
> 
>            Reapply the sparsity pattern rules to paths in the working tree.
>            Commands like merge or rebase can materialize paths to do their
>            work (e.g. in order to show you a conflict), and other
>            sparse-checkout commands might fail to sparsify an individual file
>            (e.g. because it has unstaged changes or conflicts). In such cases,
>            it can make sense to run git sparse-checkout reapply later after
>            cleaning up affected paths (e.g. resolving conflicts, undoing or
>            committing changes, etc.).

I have a TODO to add test cases around this behavior, so we can have concrete expectations. I'll incorporate them into the existing test cases around merge conflicts.

This may be another example of Git leaving files around that should be deleted in order to efficiently work with a sparse index.

Show 29 quoted lines
> Now, if these paths stick around despite being outside the sparsity
> specification, users may decide to modify them.  And if they have
> modified them and run your command, won't you succeed in collapsing to
> a sparse directory tree?  And then wouldn't this cause unstaged
> changes to be discarded?  (I know this is a rare case, because users
> would probably only merge or rebase changes they made while in their
> sparse-checkout, and thus conflicts would generally be limited to the
> sparse-checkout, but there are at least three ways I can think of that
> conflicts could be triggered outside their sparse checkout, so I think
> it's a realistic scenario that we should think through.)
> 
> Throwing away unstaged changes is something that is usually gated
> behind a forcing flag (e.g. `git reset --hard` or `git checkout
> --force`).  I know, we currently also gate removal of untracked files
> in `git clean` behind a `--force` flag as well and I'm not concerned
> with throwing away untracked files with your command without a forcing
> flag, but I'm just wondering if we should be more careful with
> unstaged changes than with untracked files.
> 
> Perhaps everyone is fine with also throwing away unstaged changes as
> part of this command.  I could be convinced of that.  But if so, that
> should at least be called out rather explicitly in the commit message,
> the documentation, and the tests, whereas currently your patch is
> silent on anything other than untracked and ignored files.
> 
> (Or, if my memory is out-of-date about materialized paths persisting
> after their conflicts are resolved and a commit happens, then it'd
> probably be worth calling that out in the commit message and perhaps
> also updating some wording on the reapply subcommand.)

These are good considerations that I'll explore with tests (or point to existing tests as I investigate). One thing to keep in mind is that the SKIP_WORKTREE bit does some amount of ignoring the worktree by not modifying what is there, and that may include some issues around reporting the changes in 'status' or staging the changes in 'add'.

A lot of your concerns seem like they would be satisfied by providing a verbose file-by-file output of what would be deleted and potentially having --dry-run be the default mode.

Show 30 quoted lines
>>> Even after resolving such a merge and committing, the paths may remain
>>> around until the user does a 'git sparse-checkout reapply' (I don't
>>> remember details here, but our documentation for reapply certainly
>>> says so), and since the file might stick around, the user may make
>>> further modifications to such a file.
>>>
>>> ...or will the convert_to_sparse() call above fail in all these cases?
>>>  If it does, should it give a better and more useful error message
>>> than "failed to convert index to a sparse index" and rather e.g. "path
>>> %s has modifications; please stage or revert first"?
>>
>> It won't fail. It just won't collapse as far.
> 
> Oh!  Based on this hint, I went and looked up the code for this; it's
> from convert_to_sparse_rec(), right?  I see something interesting
> there; does the present-despite-skipped checks (from 82386b44963f
> (Merge branch 'en/present-despite-skipped', 2022-03-09)) cause this
> collapsing to also fail for unstaged entries?  I.e. this part of
> convert_to_sparse_rec():
> 
>                 if (ce_stage(ce) ||
>                     S_ISGITLINK(ce->ce_mode) ||
>                     !(ce->ce_flags & CE_SKIP_WORKTREE))
>                         can_convert = 0;
> 
> The `ce_stage(ce)` part of it is what prevent it from collapsing when
> there are conflicts, and I think the `!(ce->ce_flags &
> CE_SKIP_WORKTREE))` would prevent it from collapsing any tracked files
> whatsoever, whether modified or not, due to the
> present-despite-skipped checks.  Does that sound right?
This matches my expectations.
Show 6 quoted lines
> In other words, perhaps your clean command as implemented really does
> only handle untracked and ignored files, and if the user also has
> tracked-but-unmodified or tracked-with-unstaged-changes or
> tracked-with-staged-changes then this command won't actually restore
> performance for them until they _also_ run `git sparse-checkout
> reapply` ?

Worth adding testing to be sure, though I believe 'git sparse-checkout clean' would help if they stage any changes (resolving conflicts, if any) and commit those results. The files won't get cleaned by 'git commit' but the clean operation should work after that.

Show 8 quoted lines
>> You do make a good point that there could be extra help messages to say
>> that there are uncollapsed directories (detectable by seeing a blob path
>> with the skip-worktree bit on, maybe). I will think on this.
> 
> In order to detect this by the skip-worktree bit, you'd probably need
> to run it as part of the present-despite-skipped checks mentioned
> above (or run it before those checks clear the skip-worktree bit for
> present files).
I'll check in on this as I explore more deeply in the code.

Thanks for the careful review of these fine details! -Stolee

Previous: Elijah NewrenNext: Elijah Newren
Message 14 of 69 in “sparse-checkout: add 'clean' command”
  1. 0/3 sparse-checkout: add 'clean' commandDerrick Stolee via GitGitGadget, Jul 8, 2025
  2. 1/3 sparse-checkout: remove use of the_repositoryDerrick Stolee via GitGitGadget, Jul 8, 2025
  3. Elijah NewrenJul 8, 2025
  4. Junio C HamanoJul 8, 2025
  5. 2/3 sparse-checkout: add 'clean' commandDerrick Stolee via GitGitGadget, Jul 8, 2025
  6. Patrick SteinhardtJul 8, 2025
  7. Junio C HamanoJul 8, 2025
  8. Junio C HamanoJul 8, 2025
  9. Derrick StoleeJul 9, 2025
  10. Junio C HamanoJul 9, 2025
  11. Elijah NewrenJul 8, 2025
  12. Derrick StoleeJul 9, 2025
  13. Elijah NewrenJul 9, 2025
  14. Derrick StoleeJul 15, 2025
  15. Elijah NewrenJul 15, 2025
  16. 3/3 sparse-index: point users to new 'clean' actionDerrick Stolee via GitGitGadget, Jul 8, 2025
  17. Elijah NewrenJul 8, 2025
  18. Patrick SteinhardtJul 8, 2025
  19. Elijah NewrenJul 8, 2025
  20. Elijah NewrenJul 8, 2025
  21. Junio C HamanoJul 8, 2025
  22. Derrick StoleeJul 9, 2025
  23. 0/8 sparse-checkout: add 'clean' commandDerrick Stolee via GitGitGadget, Jul 17, 2025
  24. 1/8 sparse-checkout: remove use of the_repositoryDerrick Stolee via GitGitGadget, Jul 17, 2025
  25. 2/8 sparse-checkout: add basics of 'clean' commandDerrick Stolee via GitGitGadget, Jul 17, 2025
  26. Elijah NewrenAug 5, 2025
  27. Derrick StoleeSep 11, 2025
  28. 3/8 sparse-checkout: match some 'clean' behaviorDerrick Stolee via GitGitGadget, Jul 17, 2025
  29. Elijah NewrenAug 5, 2025
  30. Derrick StoleeSep 11, 2025
  31. 4/8 dir: add generic "walk all files" helperDerrick Stolee via GitGitGadget, Jul 17, 2025
  32. Elijah NewrenAug 5, 2025
  33. 5/8 sparse-checkout: add --verbose option to 'clean'Derrick Stolee via GitGitGadget, Jul 17, 2025
  34. Elijah NewrenAug 5, 2025
  35. Derrick StoleeSep 11, 2025
  36. 6/8 sparse-index: point users to new 'clean' actionDerrick Stolee via GitGitGadget, Jul 17, 2025
  37. 7/8 t: expand tests around sparse merges and cleanDerrick Stolee via GitGitGadget, Jul 17, 2025
  38. 8/8 sparse-checkout: make 'clean' clear more filesDerrick Stolee via GitGitGadget, Jul 17, 2025
  39. Elijah NewrenAug 6, 2025
  40. Derrick StoleeSep 11, 2025
  41. Derrick StoleeSep 11, 2025
  42. Junio C HamanoAug 28, 2025
  43. Elijah NewrenAug 29, 2025
  44. Junio C HamanoAug 29, 2025
  45. Junio C HamanoAug 29, 2025
  46. Derrick StoleeAug 30, 2025
  47. 0/7 sparse-checkout: add 'clean' commandDerrick Stolee via GitGitGadget, Sep 12, 2025
  48. 1/7 sparse-checkout: remove use of the_repositoryDerrick Stolee via GitGitGadget, Sep 12, 2025
  49. 2/7 sparse-checkout: add basics of 'clean' commandDerrick Stolee via GitGitGadget, Sep 12, 2025
  50. Elijah NewrenOct 7, 2025
  51. Derrick StoleeOct 20, 2025
  52. 3/7 sparse-checkout: match some 'clean' behaviorDerrick Stolee via GitGitGadget, Sep 12, 2025
  53. 4/7 dir: add generic "walk all files" helperDerrick Stolee via GitGitGadget, Sep 12, 2025
  54. 5/7 sparse-checkout: add --verbose option to 'clean'Derrick Stolee via GitGitGadget, Sep 12, 2025
  55. Derrick StoleeSep 15, 2025
  56. Junio C HamanoSep 15, 2025
  57. Derrick StoleeSep 16, 2025
  58. 6/7 sparse-index: point users to new 'clean' actionDerrick Stolee via GitGitGadget, Sep 12, 2025
  59. Elijah NewrenOct 7, 2025
  60. Derrick StoleeOct 20, 2025
  61. 7/7 t: expand tests around sparse merges and cleanDerrick Stolee via GitGitGadget, Sep 12, 2025
  62. Junio C HamanoSep 12, 2025
  63. Derrick StoleeSep 26, 2025
  64. Elijah NewrenSep 26, 2025
  65. Elijah NewrenOct 7, 2025
  66. Derrick StoleeOct 20, 2025
  67. 8/8 sparse-index: improve advice message instructionsDerrick Stolee, Oct 20, 2025
  68. Junio C HamanoOct 20, 2025
  69. Elijah NewrenOct 24, 2025

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