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[PATCH v4 6/7] gc --auto: exclude base pack if not enough mem to "repack -ad"

From
Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Date
Mar 24, 2018, 07:42 UTC
Message-ID
<20180324074308.18934-12-pclouds@gmail.com>
In-Reply-To
<20180324074308.18934-1-pclouds@gmail.com>

pack-objects could be a big memory hog especially on large repos, everybody knows that. The suggestion to stick a .keep file on the giant base pack to avoid this problem is also known for a long time.

Recent patches add an option to do just this, but it has to be either configured or activated manually. This patch lets `git gc --auto` activate this mode automatically when it thinks `repack -ad` will use a lot of memory and start affecting the system due to swapping or flushing OS cache.

gc --auto decides to do this based on an estimation of pack-objects memory usage, which is quite accurate at least for the heap part, and whether that fits in half of system memory (the assumption here is for desktop environment where there are many other applications running).

This mechanism only kicks in if gc.bigBasePackThreshold is not configured. If it is, it is assumed that the user already knows what they want.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
---
 Documentation/git-gc.txt |  9 +++-
 builtin/gc.c             | 98 +++++++++++++++++++++++++++++++++++++++-
 builtin/pack-objects.c   |  2 +-
 config.mak.uname         |  1 +
 git-compat-util.h        |  4 ++
 pack-objects.h           |  2 +
 t/t6500-gc.sh            |  7 +++
 7 files changed, 119 insertions(+), 4 deletions(-)
diff --git a/Documentation/git-gc.txt b/Documentation/git-gc.txt
index 0adf381b52..7549094900 100644
--- a/Documentation/git-gc.txt
+++ b/Documentation/git-gc.txt
@@ -58,8 +58,13 @@ If the number of packs exceeds the value of `gc.autoPackLimit`,
 then existing packs (except those marked with a `.keep` file
 or over `gc.bigPackThreshold` limit)
 are consolidated into a single pack by using the `-A` option of
-'git repack'. Setting `gc.autoPackLimit` to 0 disables
-automatic consolidation of packs.
+'git repack'.
+If the amount of memory is estimated not enough for `git repack` to
+run smoothly and `gc.bigPackThreshold` is not set, the largest
+pack will also be excluded (this is the equivalent of running `git gc`
+with `--keep-base-pack`).
+Setting `gc.autoPackLimit` to 0 disables automatic consolidation of
+packs.
 
 --prune=<date>::
 	Prune loose objects older than date (default is 2 weeks ago,
diff --git a/builtin/gc.c b/builtin/gc.c
index 74d3aaa270..d0b04e369e 100644
--- a/builtin/gc.c
+++ b/builtin/gc.c
@@ -20,6 +20,10 @@
 #include "argv-array.h"
 #include "commit.h"
 #include "packfile.h"
+#include "pack.h"
+#include "pack-objects.h"
+#include "blob.h"
+#include "tree.h"
 
 #define FAILED_RUN "failed to run %s"
 
@@ -40,6 +44,7 @@ static const char *gc_log_expire = "1.day.ago";
 static const char *prune_expire = "2.weeks.ago";
 static const char *prune_worktrees_expire = "3.months.ago";
 static unsigned long big_pack_threshold;
+static unsigned long max_delta_cache_size = DEFAULT_DELTA_CACHE_SIZE;
 
 static struct argv_array pack_refs_cmd = ARGV_ARRAY_INIT;
 static struct argv_array reflog = ARGV_ARRAY_INIT;
@@ -128,6 +133,7 @@ static void gc_config(void)
 	git_config_get_expiry("gc.logexpiry", &gc_log_expire);
 
 	git_config_get_ulong("gc.bigpackthreshold", &big_pack_threshold);
+	git_config_get_ulong("pack.deltacachesize", &max_delta_cache_size);
 
 	git_config(git_default_config, NULL);
 }
@@ -167,7 +173,8 @@ static int too_many_loose_objects(void)
 	return needed;
 }
 
-static void find_base_packs(struct string_list *packs, unsigned long limit)
+static struct packed_git *find_base_packs(struct string_list *packs,
+					  unsigned long limit)
 {
 	struct packed_git *p, *base = NULL;
 
@@ -186,6 +193,8 @@ static void find_base_packs(struct string_list *packs, unsigned long limit)
 
 	if (base)
 		string_list_append(packs, base->pack_name);
+
+	return base;
 }
 
 static int too_many_packs(void)
@@ -211,6 +220,79 @@ static int too_many_packs(void)
 	return gc_auto_pack_limit < cnt;
 }
 
+static uint64_t total_ram(void)
+{
+#if defined(HAVE_SYSINFO)
+	struct sysinfo si;
+
+	if (!sysinfo(&si))
+		return si.totalram;
+#elif defined(HAVE_BSD_SYSCTL) && (defined(HW_MEMSIZE) || defined(HW_PHYSMEM))
+	int64_t physical_memory;
+	int mib[2];
+	size_t length;
+
+	mib[0] = CTL_HW;
+# if defined(HW_MEMSIZE)
+	mib[1] = HW_MEMSIZE;
+# else
+	mib[1] = HW_PHYSMEM;
+# endif
+	length = sizeof(int64_t);
+	if (!sysctl(mib, 2, &physical_memory, &length, NULL, 0))
+		return physical_memory;
+#elif defined(GIT_WINDOWS_NATIVE)
+	MEMORYSTATUSEX memInfo;
+
+	memInfo.dwLength = sizeof(MEMORYSTATUSEX);
+	if (GlobalMemoryStatusEx(&memInfo))
+		return memInfo.ullTotalPhys;
+#endif
+	return 0;
+}
+
+static uint64_t estimate_repack_memory(struct packed_git *pack)
+{
+	unsigned long nr_objects = approximate_object_count();
+	size_t os_cache, heap;
+
+	if (!pack || !nr_objects)
+		return 0;
+
+	/*
+	 * First we have to scan through at least one pack.
+	 * Assume enough room in OS file cache to keep the entire pack
+	 * or we may accidentally evict data of other processes from
+	 * the cache.
+	 */
+	os_cache = pack->pack_size + pack->index_size;
+	/* then pack-objects needs lots more for book keeping */
+	heap = sizeof(struct object_entry) * nr_objects;
+	/*
+	 * internal rev-list --all --objects takes up some memory too,
+	 * let's say half of it is for blobs
+	 */
+	heap += sizeof(struct blob) * nr_objects / 2;
+	/*
+	 * and the other half is for trees (commits and tags are
+	 * usually insignificant)
+	 */
+	heap += sizeof(struct tree) * nr_objects / 2;
+	/* and then obj_hash[], underestimated in fact */
+	heap += sizeof(struct object *) * nr_objects;
+	/* revindex is used also */
+	heap += sizeof(struct revindex_entry) * nr_objects;
+	/*
+	 * read_sha1_file() (either at delta calculation phase, or
+	 * writing phase) also fills up the delta base cache
+	 */
+	heap += delta_base_cache_limit;
+	/* and of course pack-objects has its own delta cache */
+	heap += max_delta_cache_size;
+
+	return os_cache + heap;
+}
+
 static int keep_one_pack(struct string_list_item *item, void *data)
 {
 	argv_array_pushf(&repack, "--keep-pack=%s", basename(item->string));
@@ -261,6 +343,20 @@ static int need_to_gc(void)
 				string_list_clear(&keep_pack, 0);
 				find_base_packs(&keep_pack, 0);
 			}
+		} else {
+			struct packed_git *p = find_base_packs(&keep_pack, 0);
+			uint64_t mem_have, mem_want;
+
+			mem_have = total_ram();
+			mem_want = estimate_repack_memory(p);
+
+			/*
+			 * Only allow 1/2 of memory for pack-objects, leave
+			 * the rest for the OS and other processes in the
+			 * system.
+			 */
+			if (!mem_have || mem_want < mem_have / 2)
+				string_list_clear(&keep_pack, 0);
 		}
 
 		add_repack_all_option(&keep_pack);
diff --git a/builtin/pack-objects.c b/builtin/pack-objects.c
index 7ec70131a9..8b2f8b72bf 100644
--- a/builtin/pack-objects.c
+++ b/builtin/pack-objects.c
@@ -80,7 +80,7 @@ static uint16_t write_bitmap_options;
 static int exclude_promisor_objects;
 
 static unsigned long delta_cache_size = 0;
-static unsigned long max_delta_cache_size = 256 * 1024 * 1024;
+static unsigned long max_delta_cache_size = DEFAULT_DELTA_CACHE_SIZE;
 static unsigned long cache_max_small_delta_size = 1000;
 
 static unsigned long window_memory_limit = 0;
diff --git a/config.mak.uname b/config.mak.uname
index 6a1d0de0cc..ae9cbccec1 100644
--- a/config.mak.uname
+++ b/config.mak.uname
@@ -37,6 +37,7 @@ ifeq ($(uname_S),Linux)
 	HAVE_GETDELIM = YesPlease
 	SANE_TEXT_GREP=-a
 	FREAD_READS_DIRECTORIES = UnfortunatelyYes
+	BASIC_CFLAGS += -DHAVE_SYSINFO
 endif
 ifeq ($(uname_S),GNU/kFreeBSD)
 	HAVE_ALLOCA_H = YesPlease
diff --git a/git-compat-util.h b/git-compat-util.h
index 07e383257b..e373af48b8 100644
--- a/git-compat-util.h
+++ b/git-compat-util.h
@@ -284,6 +284,10 @@ extern char *gitdirname(char *);
 #include <openssl/err.h>
 #endif
 
+#ifdef HAVE_SYSINFO
+# include <sys/sysinfo.h>
+#endif
+
 /* On most systems <netdb.h> would have given us this, but
  * not on some systems (e.g. z/OS).
  */
diff --git a/pack-objects.h b/pack-objects.h
index 03f1191659..af4f46c026 100644
--- a/pack-objects.h
+++ b/pack-objects.h
@@ -1,6 +1,8 @@
 #ifndef PACK_OBJECTS_H
 #define PACK_OBJECTS_H
 
+#define DEFAULT_DELTA_CACHE_SIZE (256 * 1024 * 1024)
+
 struct object_entry {
 	struct pack_idx_entry idx;
 	unsigned long size;	/* uncompressed size */
diff --git a/t/t6500-gc.sh b/t/t6500-gc.sh
index a95969af2a..100f287b97 100755
--- a/t/t6500-gc.sh
+++ b/t/t6500-gc.sh
@@ -5,6 +5,13 @@ test_description='basic git gc tests
 
 . ./test-lib.sh
 
+test_expect_success 'setup' '
+	# do not let the amount of physical memory affects gc
+	# behavior, make sure we always pack everything to one pack by
+	# default
+	git config gc.bigPackThreshold 2g
+'
+
 test_expect_success 'gc empty repository' '
 	git gc
 '
-- 
2.17.0.rc0.348.gd5a49e0b6f
Previous: Nguyễn Thái Ngọc DuyNext: Nguyễn Thái Ngọc Duy
Message 56 of 110 in “Combine t/helper binaries into a single one”
  1. 00/36 Combine t/helper binaries into a single oneNguyễn Thái Ngọc Duy, Mar 17, 2018
  2. 01/36 t/helper: add an empty test-tool programNguyễn Thái Ngọc Duy, Mar 17, 2018
  3. 03/36 t/helper: merge test-sha1 into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  4. 10/36 t/helper: merge test-dump-cache-tree into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  5. 13/36 t/helper: merge test-genrandom into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  6. 11/36 t/helper: merge test-dump-split-index into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  7. 19/36 t/helper: merge test-online-cpus into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  8. 22/36 t/helepr: merge test-read-cache into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  9. Eric SunshineMar 18, 2018
  10. 26/36 t/helper: merge test-run-command into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  11. 28/36 t/helper: merge test-sha1-array into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  12. 31/36 t/helper: merge test-string-list into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  13. 33/36 t/helper: merge test-subprocess into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  14. 35/36 t/helper: merge test-wildmatch into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  15. 34/36 t/helper: merge test-urlmatch-.. into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  16. Eric SunshineMar 18, 2018
  17. 36/36 t/helper: merge test-write-cache into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  18. 32/36 t/helper: merge test-submodule-config into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  19. 30/36 t/helper: merge test-strcmp-offset into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  20. 27/36 t/helper: merge test-scrap-cache-tree into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  21. 29/36 t/helper: merge test-sigchain into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  22. 18/36 t/helper: merge test-mktemp into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  23. 25/36 t/helper: merge test-revision-walking into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  24. 21/36 t/helper: merge test-prio-queue into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  25. 24/36 t/helper: merge test-regex into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  26. 20/36 t/helper: merge test-path-utils into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  27. 23/36 t/helper: merge test-ref-store into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  28. 12/36 t/helper: merge test-example-decorate into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  29. 14/36 t/helper: merge test-hashmap into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  30. 17/36 t/helper: merge (unused) test-mergesort into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  31. 15/36 t/helper: merge test-index-version into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  32. 16/36 t/helper: merge (unused) test-match-trees into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  33. 08/36 t/helper: merge (unused) test-delta into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  34. 05/36 t/helper: merge test-config into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  35. 02/36 t/helper: merge test-chmtime into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  36. 09/36 t/helper: merge test-drop-caches into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  37. 04/36 t/helper: merge test-lazy-init-name-hash into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  38. Eric SunshineMar 18, 2018
  39. Duy NguyenMar 18, 2018
  40. Eric SunshineMar 18, 2018
  41. Jeff HostetlerMar 19, 2018
  42. Duy NguyenMar 19, 2018
  43. 07/36 t/helper: merge test-date into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  44. 06/36 t/helper: merge test-ctype into test-toolNguyễn Thái Ngọc Duy, Mar 17, 2018
  45. 00/36 Combine t/helper binaries into a single oneNguyễn Thái Ngọc Duy, Mar 24, 2018
  46. 1/7 t7700: have closing quote of a test at the beginning of lineNguyễn Thái Ngọc Duy, Mar 24, 2018
  47. 01/36 t/helper: add an empty test-tool programNguyễn Thái Ngọc Duy, Mar 24, 2018
  48. 2/7 repack: add --keep-pack optionNguyễn Thái Ngọc Duy, Mar 24, 2018
  49. 03/36 t/helper: merge test-sha1 into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  50. 05/36 t/helper: merge test-config into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  51. 4/7 gc: add gc.bigPackThreshold configNguyễn Thái Ngọc Duy, Mar 24, 2018
  52. 06/36 t/helper: merge test-ctype into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  53. 04/36 t/helper: merge test-lazy-init-name-hash into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  54. 07/36 t/helper: merge test-date into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  55. 5/7 gc: handle a corner case in gc.bigPackThresholdNguyễn Thái Ngọc Duy, Mar 24, 2018
  56. 6/7 gc --auto: exclude base pack if not enough mem to "repack -ad"Nguyễn Thái Ngọc Duy, Mar 24, 2018
  57. 7/7 pack-objects: show some progress when counting kept objectsNguyễn Thái Ngọc Duy, Mar 24, 2018
  58. 3/7 gc: add --keep-largest-pack optionNguyễn Thái Ngọc Duy, Mar 24, 2018
  59. Ævar Arnfjörð BjarmasonMar 24, 2018
  60. Duy NguyenMar 24, 2018
  61. Junio C HamanoMar 26, 2018
  62. 02/36 t/helper: merge test-chmtime into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  63. 00/36 Combine t/helper binaries into a single oneNguyễn Thái Ngọc Duy, Mar 24, 2018
  64. 01/36 t/helper: add an empty test-tool programNguyễn Thái Ngọc Duy, Mar 24, 2018
  65. Johannes SchindelinMar 26, 2018
  66. Duy NguyenMar 26, 2018
  67. Johannes SchindelinMar 26, 2018
  68. SZEDER GáborMar 26, 2018
  69. Johannes SchindelinMar 27, 2018
  70. 02/36 t/helper: merge test-chmtime into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  71. 06/36 t/helper: merge test-ctype into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  72. 08/36 t/helper: merge (unused) test-delta into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  73. 07/36 t/helper: merge test-date into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  74. 09/36 t/helper: merge test-drop-caches into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  75. 13/36 t/helper: merge test-genrandom into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  76. 14/36 t/helper: merge test-hashmap into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  77. 16/36 t/helper: merge (unused) test-match-trees into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  78. 12/36 t/helper: merge test-example-decorate into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  79. 26/36 t/helper: merge test-run-command into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  80. 27/36 t/helper: merge test-scrap-cache-tree into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  81. 29/36 t/helper: merge test-sigchain into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  82. 28/36 t/helper: merge test-sha1-array into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  83. 30/36 t/helper: merge test-strcmp-offset into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  84. 33/36 t/helper: merge test-subprocess into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  85. 35/36 t/helper: merge test-wildmatch into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  86. 34/36 t/helper: merge test-urlmatch-normalization into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  87. 36/36 t/helper: merge test-write-cache into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  88. 32/36 t/helper: merge test-submodule-config into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  89. 31/36 t/helper: merge test-string-list into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  90. 15/36 t/helper: merge test-index-version into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  91. 25/36 t/helper: merge test-revision-walking into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  92. 18/36 t/helper: merge test-mktemp into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  93. 24/36 t/helper: merge test-regex into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  94. 23/36 t/helper: merge test-ref-store into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  95. 17/36 t/helper: merge (unused) test-mergesort into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  96. 22/36 t/helper: merge test-read-cache into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  97. 19/36 t/helper: merge test-online-cpus into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  98. 10/36 t/helper: merge test-dump-cache-tree into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  99. 11/36 t/helper: merge test-dump-split-index into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  100. 20/36 t/helper: merge test-path-utils into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  101. 21/36 t/helper: merge test-prio-queue into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  102. 03/36 t/helper: merge test-sha1 into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  103. 05/36 t/helper: merge test-config into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  104. 04/36 t/helper: merge test-lazy-init-name-hash into test-toolNguyễn Thái Ngọc Duy, Mar 24, 2018
  105. Ævar Arnfjörð BjarmasonMar 24, 2018
  106. Duy NguyenMar 24, 2018
  107. Junio C HamanoMar 26, 2018
  108. Johannes SchindelinMar 27, 2018
  109. Junio C HamanoMar 27, 2018
  110. Johannes SchindelinMar 27, 2018

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