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Re: [PATCH/RFC] Allow writing loose objects that are corrupted in a pack file

From
RBR. Tyler Ballance <tyler@slide.com>
Date
Jan 6, 2009, 22:52 UTC
Message-ID
<1231282320.8870.52.camel@starfruit>
In-Reply-To
<20081209093627.77039a1f@perceptron>
On Tue, 2008-12-09 at 09:36 +0100, Jan Krüger wrote:
> For fixing a corrupted repository by using backup copies of individual
> files, allow write_sha1_file() to write loose files even if the object
> already exists in a pack file, but only if the existing entry is marked
> as corrupted.
I figured I'd reply to this again, since the issue cropped up again.

We started experiencing *large* numbers of corruptions like the ones that started the thread (one developer was receiving them once or twice a day) with v1.6.0.4

We went ahead and upgraded to a custom build of v1.6.1 with Jan's patch (below) and the issues /seem/ to have resolved themselves. I'm not certain whether Jan's patch was really responsible, or if there was another issue that caused this to correct itself in v1.6.1.

As it stands, I think it's safe to assume that given the frequency of the occurances that they were not tied to a memory or disk error (or other levels of the machine's stack would be suffering as well). The only thing I can think of is that /some/ developers who've experienced the issue are using Samba mount points and changing files in Mac OS X, but using Git on the mounted share (i.e. TextMate changes a file hosted on Samba, changes are committed in an SSH session on that machine), but that doesn't account for everything.

If there was something else included in the v1.6.1 release please let me know so I can back Jan's patch out.

Cheers
Show 56 quoted lines
> 
> Signed-off-by: Jan Krüger <jk@jk.gs>
> ---
> 
> On IRC I talked to rtyler who had a corrupted pack file and plenty of
> object backups by way of cloned repositories. We decided to try
> extracting the corrupted objects from the other object database and
> injecting them into the broken repo as loose objects, but this failed
> because sha1_write_file() refuses to write loose objects that are
> already present in a pack file.
> 
> This patch expands the check to see if the pack entry has been marked
> as corrupted and, if so, allows writing a loose object with the same
> ID. Unfortunately, when Tyler tried a merge while using this patch,
> something we didn't manage to track down happened and now git doesn't
> consider the object corrupted anymore. I'm not sure enough that it
> wasn't caused by the patch to submit this patch without hesitation.
> 
> Apart from that, I think the change is not all too great since it makes
> write_sha1_file() walk the list of pack entries twice. That's a bit of
> a waste.
> 
> So those are the reasons why I wanted a few opinions first. Another
> reason is that there might be a way smarter method to fix this kind of
> problem, in which case I'd love hearing about it for future reference.
> 
>  sha1_file.c |    9 +++++----
>  1 files changed, 5 insertions(+), 4 deletions(-)
> 
> diff --git a/sha1_file.c b/sha1_file.c
> index 6c0e251..17085cc 100644
> --- a/sha1_file.c
> +++ b/sha1_file.c
> @@ -2373,14 +2373,17 @@ int write_sha1_file(void *buf, unsigned long len, const char *type, unsigned cha
>  	char hdr[32];
>  	int hdrlen;
>  
> -	/* Normally if we have it in the pack then we do not bother writing
> -	 * it out into .git/objects/??/?{38} file.
> -	 */
>  	write_sha1_file_prepare(buf, len, type, sha1, hdr, &hdrlen);
>  	if (returnsha1)
>  		hashcpy(returnsha1, sha1);
> -	if (has_sha1_file(sha1))
> -		return 0;
> +	/* Normally if we have it in the pack then we do not bother writing
> +	 * it out into .git/objects/??/?{38} file. We do, though, if there
> +	 * is no chance that we have an uncorrupted version of the object.
> +	 */
> +	if (has_sha1_file(sha1)) {
> +		if (has_loose_object(sha1) || !has_packed_and_bad(sha1))
> +			return 0;
> +	}
>  	return write_loose_object(sha1, hdr, hdrlen, buf, len, 0);
>  }
>  
-- 
-R. Tyler Ballance
Slide, Inc.
Previous: Shawn O. PearceNext: Nicolas Pitre
Message 4 of 49 in “Allow writing loose objects that are corrupted in a pack file”
  1. Allow writing loose objects that are corrupted in a pack fileJan Krüger, Dec 9, 2008
  2. R. Tyler BallanceDec 9, 2008
  3. Shawn O. PearceDec 9, 2008
  4. R. Tyler BallanceJan 6, 2009
  5. Nicolas PitreJan 7, 2009
  6. R. Tyler BallanceJan 7, 2009
  7. Nicolas PitreJan 7, 2009
  8. R. Tyler BallanceJan 7, 2009
  9. Nicolas PitreJan 7, 2009
  10. Linus TorvaldsJan 7, 2009
  11. R. Tyler BallanceJan 7, 2009
  12. Junio C HamanoJan 7, 2009
  13. R. Tyler BallanceJan 7, 2009
  14. Junio C HamanoJan 7, 2009
  15. R. Tyler BallanceJan 7, 2009
  16. Nicolas PitreJan 7, 2009
  17. Linus TorvaldsJan 7, 2009
  18. Linus TorvaldsJan 7, 2009
  19. R. Tyler BallanceJan 7, 2009
  20. Linus TorvaldsJan 7, 2009
  21. Public repro case! Re: [PATCH/RFC] Allow writing loose objects that are corrupted in a pack fileR. Tyler Ballance, Jan 8, 2009
  22. Linus TorvaldsJan 8, 2009
  23. R. Tyler BallanceJan 8, 2009
  24. Linus TorvaldsJan 8, 2009
  25. Linus TorvaldsJan 8, 2009
  26. Shawn O. PearceJan 8, 2009
  27. James PickensJan 8, 2009
  28. Shawn O. PearceJan 8, 2009
  29. Junio C HamanoJan 8, 2009
  30. Shawn O. PearceJan 8, 2009
  31. Boyd Stephen Smith Jr.Jan 8, 2009
  32. Linus TorvaldsJan 8, 2009
  33. Shawn O. PearceJan 8, 2009
  34. Linus TorvaldsJan 8, 2009
  35. Shawn O. PearceJan 8, 2009
  36. Wrap inflateInit to retry allocation after releasing pack memoryShawn O. Pearce, Jan 8, 2009
  37. Linus TorvaldsJan 8, 2009
  38. Junio C HamanoJan 8, 2009
  39. Linus TorvaldsJan 8, 2009
  40. Shawn O. PearceJan 8, 2009
  41. Linus TorvaldsJan 8, 2009
  42. R. Tyler BallanceJan 8, 2009
  43. Linus TorvaldsJan 8, 2009
  44. R. Tyler BallanceJan 8, 2009
  45. Junio C HamanoJan 9, 2009
  46. Linus TorvaldsJan 8, 2009
  47. R. Tyler BallanceJan 8, 2009
  48. Linus TorvaldsJan 8, 2009
  49. R. Tyler BallanceJan 8, 2009

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