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Re: [PATCH 00/30] [RFC] extensions.refFormat and packed-refs v2 file format

From
Derrick Stolee <derrickstolee@github.com>
Date
Nov 30, 2022, 15:16 UTC
Message-ID
<f1c45bd5-692e-85db-90c3-c516003f47e5@github.com>
In-Reply-To
<CAFQ2z_MZd150kQNTcxaDRVvALpZcCUbRj_81pt-VBY8DRaoRNw@mail.gmail.com>
On 11/28/2022 1:56 PM, Han-Wen Nienhuys wrote:
Han-Wen,

Thanks for taking the time to reply. I was specifically hoping for your perspective on the ideas here.

Show 15 quoted lines
> On Mon, Nov 7, 2022 at 7:36 PM Derrick Stolee via GitGitGadget
> <gitgitgadget@gmail.com> wrote:
>> After carefully considering several options, it seemed that there are two
>> solutions that can solve this effectively:
>>
>>  1. Wait for reftable to be integrated into Git.
>>  2. Update the packed-refs backend to have a stacked version.
>>
>> The reftable work seems currently dormant. The format is pretty complicated
>> and I have a difficult time seeing a way forward for it to be fully
>> integrated into Git.
>
> The format is somewhat complicated, and I think it would have been
> possible to design a block-oriented sorted-table approach that is
> simpler, but the JGit implementation has set it in stone.

I agree that if we pursue reftable, that we should use the format as agreed upon and implemented in JGit. I do want to say that while I admire JGit's dedication to being compatible with repositories created by Git, I don't think the reverse is a goal of the Git project.

Show 6 quoted lines
> But, to put
> this in perspective, the amount of work for getting the format to
> read/write correctly has been completely dwarfed by the effort needed
> to make the refs API in git represent a true abstraction boundary.
> Also, if you're introducing a new format, one might as well try to
> optimize it a bit.

That's another reason why I was able to make an incremental improvement so quickly in this RFC: I worked within the existing API, reducing the overall impact of the change. It's easier to evaluate the performance difference of packed-refs v2 versus packed-refs v1 because the change is isolated.

That work to make the Git refs API work with the reftable library is further ahead than I though (in your draft PR) but it is also completely missing from the current Git tree, so that work still needs to be arranged into a reviewable series before it is available to us. That does seem like a substantial amount of work, but I might have been overestimating how much work it will be compared to these changes I am advocating for.

> Here are some of the hard problems that I encountered
Thanks for including these.
Show 5 quoted lines
> * Worktrees and the main repository have a separate view of the ref
> namespace. This is not explicit in the ref backend API, and there is a
> technical limitation that the packed-refs file cannot be in a
> worktree. This means that worktrees will always continue to use
> loose-ref storage if you only extend the packed-refs backend.

If I'm understanding it correctly [1], only the special refs (like HEAD or REBASE_HEAD) are worktree-specific, and all refs under "refs/*" are repository-scoped. I don't actually think of those special refs as "loose" refs and thus they should still work under the "only packed-refs" value for extensions.refFormat. I should definitely cover this in the documentation, though. Also, [1] probably needs updating because it calls HEAD a pseudo ref even though it explicitly is not [2].

[1] https://git-scm.com/docs/git-worktree#_refs [2] https://git-scm.com/docs/gitglossary#Documentation/gitglossary.txt-aiddefpseudorefapseudoref

> * Symrefs are refs too, but for some reason the packed-refs file
> doesn't support them. Does packed-refs v2 support symrefs too?  If you
> want to snapshot the state of refs, do you want to snapshot the value
> of HEAD too?

I forgot that loose refs under .git/refs/ can be symrefs. This definitely is a limitation that I should mention. Again, pseudorefs like HEAD are not included and are stored separately, but symrefs within refs/* are not available in packed-refs (v1 or v2). That should be explicitly called out in the extensions.refFormat docs.

I imagine that such symrefs are uncommon, and users can make their own evaluation of whether that use is worth keeping loose refs or not. We can still have the {files, packed[-v2]} extension value while having a writing strategy that writes as much as possible into the packed layer.

Show 7 quoted lines
> * By not changing reflogs, you are making things simpler. (if a
> transaction updates the branch that HEAD points to, the reflog for
> HEAD has to be updated too. Because reftable updates the reflog
> transactionally, this was some extra work)
> Then again, I feel the current way that reflogs work are a bit messy,
> because directory/file conflicts force reflogs to be deleted at times
> that don't make sense from a user-perspective.

I agree that reflogs are messy. I also think that reflogs have different needs than the ref storage, so separating their needs is valuable.

> * There are a lot of commands that store SHA1s in files under .git/,
> and access them as if they are a ref (for example: rebase-apply/ ,
> CHERRY_PICK_HEAD etc.).

Yes, I think these pseudorefs are stored differently from usual refs, and hence the {packed[-v2]} extension value would still work, but I'll confirm this with more testing.

Show 14 quoted lines
>> In this RFC, I propose a different model that allows for more customization
>> and incremental updates. The extensions.refFormat config key is multi-valued
>> and defaults to the list of files and packed. In the context of this RFC,
>> the intention is to be able to add packed-v2 so the list of all three values
>> would allow Git to write and read either file format version (v1 or v2). In
>> the larger scheme, the extension could allow restricting to only loose refs
>> (just files) or only packed-refs (just packed) or even later when reftable
>> is complete, files and reftable could mean that loose refs are the primary
>> ref storage, but the reftable format serves as a drop-in replacement for the
>> packed-refs file. Not all combinations need to be understood by Git, but
>
> I'm not sure how feasible this is. reftable also holds reflog data. A
> setting {files,reftable} would either not work, or necessitate hairy
> merging of data to get the reflogs working correctly.

In this setup, would it be possible to continue using the "loose reflog" format while using reftable as the packed layer? I personally think this combination of formats to be critical to upgrading existing repositories to reftable.

(Note: there is a strategy that doesn't need this approach, but it's a bit complicated. It would involve rotating all replicas to new repositories that are configured to use reftable upon creation, getting the refs from other replicas via fetches. In my opinion, this is prohibitively expensive.)

Show 9 quoted lines
>> Between using raw OIDs and storing the depth-2 prefixes only once, this
>> format compresses the file to ~60% of its v1 size. (The format allows not
>> writing the prefix chunks, and the prefix chunks are implemented after the
>> basics of the ref chunks are complete.)
>>
>> The write times are reduced in a similar fraction to the size difference.
>> Reads are sped up somewhat, and we have the potential to do a ref count by
>
> Do you mean 'enumerate refs' ? Why would you want to count refs by prefix?
Generally, I mean these kind of operations:
* 'git for-each-ref' enumerates all refs within a prefix.
* Serving the ref advertisement enumerates all refs.
* There was a GitHub feature that counted refs and tags, but wanted to
  ignore internal ref prefixes (outside of refs/heads/* or refs/tags/*).
  It turns out that we didn't actually need the full count but an
  existence indicator, but it would be helpful to quickly identify how
  many branches or tags are in a repository at a glance. Packed-refs v1
  requires scanning the whole file while packed-refs v2 does a fixed
  number of binary searches followed by a subtraction of row indexes.
Show 12 quoted lines
>> I mentioned earlier that I had considered using reftable as a way to achieve
>> the stated goals. With the current state of that work, I'm not confident
>> that it is the right approach here.
>>
>> My main worry is that the reftable is more complicated than we need for a
>> typical Git repository that is based on a typical filesystem. This makes
>> testing the format very critical, and we seem to not be near reaching that
>> approach.
>
> I think the base code of reading and writing the reftable format is
> exercised quite exhaustively tested in unit tests. You say 'seem', but
> do you have anything concrete to say?

Our test suite is focused on integration tests at the command level. While unit tests are helpful, I'm not sure if all of the corner cases would be covered by tests that check Git commands only.

Show 13 quoted lines
>> As mentioned, the current extension plan [6] only allows reftable or files
>> and does not allow for a mix of both. This RFC introduces the possibility
>> that both could co-exist. Using that multi-valued approach means that I'm
>> able to test the v2 packed-refs file format almost as well as the v1 file
>> format within this RFC. (More tests need to be added that are specific to
>> this format, but I'm waiting for confirmation that this is an acceptable
>> direction.) At the very least, this multi-valued approach could be used as a
>> way to allow using the reftable format as a drop-in replacement for the
>> packed-refs file, as well as upgrading an existing repo to use reftable.
>
> The multi-value approach creates more combinations of code of how
> different pieces of code can interact, so I think it actually makes it
> more error-prone.

As multiple values are added, it will be important to indicate which values are not compatible with each other. However, the plan for the packed-refs improvements do add values that are orthogonal to each other. It does make testing all combinations more difficult.

Of course, if reftable is truly incompatible with loose refs, then Git can say that {reftable} is the only set of values that can use reftable, and make {files, reftable} an incompatible set (which could be understood by a later version of Git, if those barriers are overcome). However, if we do not specify the extension as multi-valued from the start, then we cannot later add this multi-valued option without changing the extension name.

Show 11 quoted lines
>> That might even help the integration process to allow the reftable format to
>> be tested at least by some subset of tests instead of waiting for a full
>> test suite update.
>
> I don't understand this comment. In the current state,
> https://github.com/git/git/pull/1215 already passes 922 of the 968
> test files if you set GIT_TEST_REFTABLE=1.
>
> See https://github.com/git/git/pull/1215#issuecomment-1329579459 for
> details. As you can see, for most test files, it's just a few
> individual test cases that fail.

My point is that to get those remaining tests passing requires a significant update to the test suite. I imagined that the complexity of that update was the blocker to completing the reftable work.

It seems that my estimation of that complexity was overly high compared to what you appear to be describing.

Show 10 quoted lines
>> I'm interested to hear from people more involved in the reftable work to see
>> the status of that project and how it matches or differs from my
>> perspective.
>
> Overall, I found that the loose/packed ref code hard to understand and
> full of arbitrary limitations (dir/file conflicts, deleting reflogs
> when branches are deleted, locking across loose/packed refs etc.).
> The way reftable stacks are setup (with both reflog and ref data
> including symrefs in the same file) make it much easier to verify that
> it behaves transactionally.

I believe you that starting with a new data model makes many of these things easier to reason with.

> For deleting refs quickly, it seems that you only need to support
> $ZEROID in packed-refs and then implement a ref database as a stack of
> packed-ref files? If you're going for minimal effort and minimal
> disruption wouldn't that be the place to start?

I disagree that jumping straight to stacked packed-refs is minimal effort or minimal disruption.

Creating the stack approach does require changing the semantics of the packed-refs format to include $ZEROID, which will modify some meanings in the iteration code. The use of a stack, as well as how layers are combined during a ref write or also during maintenance, adds complications to the locking semantics that are decently complicated.

By contrast, the v2 format is isolated to the on-disk format. None of the writing or reading semantics are changed in terms of which files to look at or write in which order. Instead, it's relatively simple to see from the format exactly how it reduces the file size but otherwise has exactly the same read/write behavior. In fact, since the refs and OIDs are all located in the same chunk in a similar order to the v1 file, we can even deduce that page cache semantics will only improve in the new format.

The reason to start with this step is that the benefits and risks are clearly understood, which can motivate us to establish the mechanism for changing the ref format by defining the extension.

Show 5 quoted lines
> You're concerned about the reftable file format (and maybe rightly
> so), but if you're changing the file format anyway and you're not
> picking reftable, why not create a block-based, indexed format that
> can support storing reflog entries at some point in the future too,
> rather than build on (the limitations) of packed-refs?

My personal feeling is that storing ref tips and storing the history of a ref are sufficiently different problems that should have their own data structures. Even if they could be combined by a common format, I don't think it is safe to transition every part of every ref operation to a new format all at once.

Looking at reftable from the perspective of a hosting provider, I'm very hesitant to recommend transitioning to it because of how it is an "all or nothing" switch. It does not fit with my expectations for safe deployment practices.

Yes, packed-refs have some limitations, but those limitations are known and we are working within them right now. I'd rather make a change to write smaller versions of the file with the same semantics as a first step.

> Or is
> packed-refs v2 backward compatible with v1 (could an old git client
> read v2 files? I think not, right?).
No, it is not backward compatible. That's why the extension is needed.
Show 5 quoted lines
> The reftable project has gotten into a slump because my work
> responsibilities have increased over the last 1.5 year squeezing down
> how much time I have for 'fun' projects. I chatted with John Cai, who
> was trying to staff this project out of Gitlab resources. I don't know
> where that stands, though.

I'll have my EM reach out to John to see where that stands to see how we can coordinate in this space.

Show 6 quoted lines
>> The one thing I can say is that if the reftable work had not already begun,
>> then this is RFC is how I would have approached a new ref format.
>>
>> I look forward to your feedback!
>
> Hope this helps.

It does help clarify where the reftable project currently stands as well as some key limitations of the packed-refs format. You've given me a lot to think about so I'll do some poking around in your branch (and do some performance tests) to see what I can make of it.

Let me attempt to summarize my understanding, now that you've added clarity:

* The reftable work needs its refs backend implemented, but your draft PR
  has a prototype of this and some basic test suite integration. There are
  54 test files that have one or more failing tests, and likely these just
  need to be adjusted to not care about loose references.
* The reftable is currently fundamentally different enough that it could
  not be used as a replacement for the packed-refs file underneath loose
  refs (primarily due to its integration with the reflog). Doing so would
  require significant work on top of your prototype.
* This further indicates that moving to reftable is an "all or nothing"
  transition, and even requires starting a repository from scratch with
  reftable enabled. This is a bit of a blocker for a hosting provider to
  transition to the format, and will likely be difficult for clients to
  adopt the feature.
* The plan established by this RFC does _not_ block reftable progress, but
  generally we prefer not having competing formats in Git, so it would be
  better to have only one, unless there is enough of a justification to
  have different formats for different use cases.

I'm going to take the following actions on my end to better understand the situation:

1. I'll take your draft PR branch and do some performance evaluations on
   the speed of ref updates compared to loose refs and my prototype of a
   two-stack packed-ref where the second layer of the stack is only for
   deleted refs.
2. I'll consult with my peers to determine how expensive it would be to
   roll out reftable via a complete replacement of our hosted
   repositories. I'll also try to discover ways to roll out the feature to
   subsets of the fleet to create a safe deployment strategy.
3. My EM and I will reach out to John Cai to learn about plans to push
   reftable over the finish line.
4. I will split out the "skip_hash" part of this RFC into its own series,
   after adding the necessary details to fsck to understand a null
   trailing hash.
Please let me know if I'm missing anything I should be investigating here.

Thanks, -Stolee

Previous: Han-Wen NienhuysNext: Phillip Wood
Message 48 of 56 in “[RFC] extensions.refFormat and packed-refs v2 file format”
  1. 00/30 [RFC] extensions.refFormat and packed-refs v2 file formatDerrick Stolee via GitGitGadget, Nov 7, 2022
  2. 01/30 hashfile: allow skipping the hash functionDerrick Stolee via GitGitGadget, Nov 7, 2022
  3. 02/30 read-cache: add index.computeHash config optionDerrick Stolee via GitGitGadget, Nov 7, 2022
  4. Elijah NewrenNov 11, 2022
  5. Derrick StoleeNov 14, 2022
  6. Ævar Arnfjörð BjarmasonNov 17, 2022
  7. 03/30 extensions: add refFormat extensionDerrick Stolee via GitGitGadget, Nov 7, 2022
  8. Elijah NewrenNov 11, 2022
  9. Derrick StoleeNov 16, 2022
  10. 06/30 refs: allow loose files without packed-refsDerrick Stolee via GitGitGadget, Nov 7, 2022
  11. 07/30 chunk-format: number of chunks is optionalDerrick Stolee via GitGitGadget, Nov 7, 2022
  12. 04/30 config: fix multi-level bulleted listDerrick Stolee via GitGitGadget, Nov 7, 2022
  13. 05/30 repository: wire ref extensions to ref backendsDerrick Stolee via GitGitGadget, Nov 7, 2022
  14. 08/30 chunk-format: document trailing table of contentsDerrick Stolee via GitGitGadget, Nov 7, 2022
  15. 09/30 chunk-format: store chunk offset during writeDerrick Stolee via GitGitGadget, Nov 7, 2022
  16. 11/30 chunk-format: parse trailing table of contentsDerrick Stolee via GitGitGadget, Nov 7, 2022
  17. 10/30 chunk-format: allow trailing table of contentsDerrick Stolee via GitGitGadget, Nov 7, 2022
  18. 13/30 packed-backend: extract add_write_error()Derrick Stolee via GitGitGadget, Nov 7, 2022
  19. 12/30 refs: extract packfile format to new fileDerrick Stolee via GitGitGadget, Nov 7, 2022
  20. 14/30 packed-backend: extract iterator/updates mergeDerrick Stolee via GitGitGadget, Nov 7, 2022
  21. 16/30 config: add config values for packed-refs v2Derrick Stolee via GitGitGadget, Nov 7, 2022
  22. 15/30 packed-backend: create abstraction for writing refsDerrick Stolee via GitGitGadget, Nov 7, 2022
  23. 17/30 packed-backend: create shell of v2 writesDerrick Stolee via GitGitGadget, Nov 7, 2022
  24. 18/30 packed-refs: write file format version 2Derrick Stolee via GitGitGadget, Nov 7, 2022
  25. 19/30 packed-refs: read file format v2Derrick Stolee via GitGitGadget, Nov 7, 2022
  26. 20/30 packed-refs: read optional prefix chunksDerrick Stolee via GitGitGadget, Nov 7, 2022
  27. 21/30 packed-refs: write prefix chunksDerrick Stolee via GitGitGadget, Nov 7, 2022
  28. 22/30 packed-backend: create GIT_TEST_PACKED_REFS_VERSIONDerrick Stolee via GitGitGadget, Nov 7, 2022
  29. 24/30 t5312: allow packed-refs v2 formatDerrick Stolee via GitGitGadget, Nov 7, 2022
  30. 23/30 t1409: test with packed-refs v2Derrick Stolee via GitGitGadget, Nov 7, 2022
  31. 26/30 t3210: require packed-refs v1 for some testsDerrick Stolee via GitGitGadget, Nov 7, 2022
  32. 25/30 t5502: add PACKED_REFS_V1 prerequisiteDerrick Stolee via GitGitGadget, Nov 7, 2022
  33. 27/30 t*: skip packed-refs v2 over http testsDerrick Stolee via GitGitGadget, Nov 7, 2022
  34. 28/30 ci: run GIT_TEST_PACKED_REFS_VERSION=2 in some buildsDerrick Stolee via GitGitGadget, Nov 7, 2022
  35. 29/30 p1401: create performance test for ref operationsDerrick Stolee via GitGitGadget, Nov 7, 2022
  36. 30/30 refs: skip hashing when writing packed-refs v2Derrick Stolee via GitGitGadget, Nov 7, 2022
  37. Derrick StoleeNov 9, 2022
  38. Elijah NewrenNov 11, 2022
  39. Derrick StoleeNov 14, 2022
  40. Elijah NewrenNov 15, 2022
  41. Derrick StoleeNov 16, 2022
  42. Elijah NewrenNov 17, 2022
  43. Junio C HamanoNov 18, 2022
  44. Elijah NewrenNov 19, 2022
  45. Taylor BlauNov 19, 2022
  46. Derrick StoleeNov 30, 2022
  47. Han-Wen NienhuysNov 28, 2022
  48. Derrick StoleeNov 30, 2022
  49. Phillip WoodNov 30, 2022
  50. Taylor BlauNov 30, 2022
  51. Han-Wen NienhuysNov 30, 2022
  52. Sean AllredNov 30, 2022
  53. Derrick StoleeDec 1, 2022
  54. Han-Wen NienhuysDec 2, 2022
  55. Ævar Arnfjörð BjarmasonDec 2, 2022
  56. Junio C HamanoNov 30, 2022

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