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Re: [PATCH v3 12/14] commit-graph: add large-filters bitmap chunk

From
Taylor Blau <me@ttaylorr.com>
Date
Aug 11, 2020, 21:18 UTC
Message-ID
<20200811211815.GA65971@syl.lan>
In-Reply-To
<4f487dca-a938-b4c4-8b77-a202209459cb@gmail.com>
On Tue, Aug 11, 2020 at 05:11:49PM -0400, Derrick Stolee wrote:
Show 21 quoted lines
> On 8/11/20 4:52 PM, Taylor Blau wrote:
> > To allow using the existing bitmap code with 64-bit words, we write the
> > data in network byte order from the 64-bit words. This means we also
> > need to read the array from the commit-graph file by translating each
> > word from network byte order using get_be64() when loading the commit
> > graph. (Note that this *could* be delayed until first-use, but a later
> > patch will rely on this being initialized early, so we assume the
> > up-front cost when parsing instead of delaying initialization).
>
> I don't think this is correct to do. This means that every commit-graph
> load will load the entire large bloom filter chunk into memory before
> allowing a single commit to be read from the graph.
>
> In the case of a very large commit-graph (> 1 million commits), this
> would cause a significant initial cost that is not necessarily needed
> for anything. For example, "git log -1" will be delayed by this action.
>
> If I understand correctly, this bloom_large bitmap is only used when
> writing Bloom filters. At that point, reading the entire bitmap from
> disk into memory is inexpensive compared to the time saved by the
> feature.

That's not quite correct. By this point in the patch series, we only use this bitmap for writing, but in the final patch, we will use it in 'load_bloom_filter_from_graph()' (see that patch for the details of why, there is an explanatory comment to that effect).

So, the way that this lazy initialization was written was subtly incorrect, since calling 'load_bloom_filter_from_graph' would return the wrong value depending on what was or wasn't called before it (namely whether or not we had initialized the bitmap).

Show 24 quoted lines
> > @@ -429,6 +430,24 @@ struct commit_graph *parse_commit_graph(struct repository *r,
> >  				graph->bloom_filter_settings->bits_per_entry = get_be32(data + chunk_offset + 8);
> >  			}
> >  			break;
> > +
> > +		case GRAPH_CHUNKID_BLOOMLARGE:
> > +			if (graph->chunk_bloom_large_filters)
> > +				chunk_repeated = 1;
> > +			else if (r->settings.commit_graph_read_changed_paths) {
>
> This is guarded against commitGraph.readChangedPaths, which is good,
> but that's not enough to claim that we need the bloom_large bitmap
> in this process.
>
> > +				size_t alloc = get_be64(chunk_lookup + 4) - chunk_offset - sizeof(uint32_t);
>
> If we store this inside the commit_graph struct, we can save this
> size for later so...
>
> > +				graph->chunk_bloom_large_filters = data + chunk_offset + sizeof(uint32_t);
> > +				graph->bloom_filter_settings->max_changed_paths = get_be32(data + chunk_offset);
>
> ...this portion can be done only when we are about to read from the
> bitmap.
Right, that all is clear.
Show 28 quoted lines
>
> > +				if (alloc) {
> > +					size_t j;
> > +					graph->bloom_large = bitmap_word_alloc(alloc);
> > +
> > +					for (j = 0; j < graph->bloom_large->word_alloc; j++)
> > +						graph->bloom_large->words[j] = get_be64(
> > +							graph->chunk_bloom_large_filters + j * sizeof(eword_t));
> > +				}
>
>
>
> > +			}
> > +			break;
> >  		}
> >
> >  		if (chunk_repeated) {
> > @@ -443,7 +462,9 @@ struct commit_graph *parse_commit_graph(struct repository *r,
> >  		/* We need both the bloom chunks to exist together. Else ignore the data */
> >  		graph->chunk_bloom_indexes = NULL;
> >  		graph->chunk_bloom_data = NULL;
> > +		graph->chunk_bloom_large_filters = NULL;
> >  		FREE_AND_NULL(graph->bloom_filter_settings);
> > +		bitmap_free(graph->bloom_large);
>
> Perhaps this bitmap_free() needs a check to see if we
> initialized it (with my recommended lazy-loading), but
> maybe not?

It does not ('bitmap_free()' understands that a NULL argument is a noop, like 'free()').

Show 25 quoted lines
>
> >  	}
> >
> >  	hashcpy(graph->oid.hash, graph->data + graph->data_len - graph->hash_len);
> > @@ -932,6 +953,20 @@ struct tree *get_commit_tree_in_graph(struct repository *r, const struct commit
> >  	return get_commit_tree_in_graph_one(r, r->objects->commit_graph, c);
> >  }
> >
> > +static int get_bloom_filter_large_in_graph(struct commit_graph *g,
> > +					   const struct commit *c)
> > +{
> > +	uint32_t graph_pos = commit_graph_position(c);
> > +	if (graph_pos == COMMIT_NOT_FROM_GRAPH)
> > +		return 0;
> > +
> > +	while (g && graph_pos < g->num_commits_in_base)
> > +		g = g->base_graph;
> > +
> > +	if (!(g && g->bloom_large))
> > +		return 0;
>
> Here is where we can check if the size of the chunk is
> non-zero and if the g->bloom_large bitmap is uninitialized.
> Since we are caring about this information, it is now time
> to do the network-byte transition of the full bitmap.

Yes, that's right. But again, we'll need to move this out to a non-static helper function so that we can call it from bloom.c in the final patch.

I'm admittedly a little unsure of what to do next, since the changes are scoped to this and the remaining patches (really just this and the final patch).

I guess I'll try the other approach of replacing these two patches by sending emails in response so that Junio can take those (I'll avoid sending a fixup patch).

Show 5 quoted lines
> > +	return bitmap_get(g->bloom_large, graph_pos - g->num_commits_in_base);
> > +}
> >
> Thanks,
> -Stolee

Thanks, Taylor

Previous: Derrick StoleeNext: Taylor Blau
Message 64 of 117 in “more miscellaneous Bloom filter improvements”
  1. 00/10 more miscellaneous Bloom filter improvementsTaylor Blau, Aug 3, 2020
  2. 01/10 commit-graph: introduce 'get_bloom_filter_settings()'Taylor Blau, Aug 3, 2020
  3. Jeff KingAug 4, 2020
  4. Taylor BlauAug 4, 2020
  5. 02/10 commit-graph: pass a 'struct repository *' in more placesTaylor Blau, Aug 3, 2020
  6. 03/10 t4216: use an '&&'-chainTaylor Blau, Aug 3, 2020
  7. 04/10 t/helper/test-read-graph.c: prepare repo settingsTaylor Blau, Aug 3, 2020
  8. 05/10 commit-graph: respect 'commitgraph.readChangedPaths'Taylor Blau, Aug 3, 2020
  9. 06/10 commit-graph.c: sort index into commits listTaylor Blau, Aug 3, 2020
  10. Derrick StoleeAug 4, 2020
  11. Taylor BlauAug 4, 2020
  12. 07/10 commit-graph: add large-filters bitmap chunkTaylor Blau, Aug 3, 2020
  13. Taylor BlauAug 3, 2020
  14. Derrick StoleeAug 4, 2020
  15. 08/10 bloom: split 'get_bloom_filter()' in twoTaylor Blau, Aug 3, 2020
  16. Derrick StoleeAug 4, 2020
  17. Taylor BlauAug 4, 2020
  18. 09/10 commit-graph: rename 'split_commit_graph_opts'Taylor Blau, Aug 3, 2020
  19. 10/10 builtin/commit-graph.c: introduce '--max-new-filters=<n>'Taylor Blau, Aug 3, 2020
  20. Derrick StoleeAug 4, 2020
  21. Taylor BlauAug 4, 2020
  22. 00/14 more miscellaneous Bloom filter improvementsTaylor Blau, Aug 5, 2020
  23. 01/14 commit-graph: introduce 'get_bloom_filter_settings()'Taylor Blau, Aug 5, 2020
  24. 02/14 t4216: use an '&&'-chainTaylor Blau, Aug 5, 2020
  25. 09/14 bloom/diff: properly short-circuit on max_changesTaylor Blau, Aug 5, 2020
  26. 10/14 commit-graph.c: sort index into commits listTaylor Blau, Aug 5, 2020
  27. 08/14 bloom: use provided 'struct bloom_filter_settings'Taylor Blau, Aug 5, 2020
  28. 07/14 bloom: split 'get_bloom_filter()' in twoTaylor Blau, Aug 5, 2020
  29. 12/14 commit-graph: add large-filters bitmap chunkTaylor Blau, Aug 5, 2020
  30. Junio C HamanoAug 5, 2020
  31. Taylor BlauAug 5, 2020
  32. Junio C HamanoAug 5, 2020
  33. Taylor BlauAug 5, 2020
  34. Taylor BlauAug 11, 2020
  35. Junio C HamanoAug 11, 2020
  36. 11/14 csum-file.h: introduce 'hashwrite_be64()'Taylor Blau, Aug 5, 2020
  37. 13/14 commit-graph: rename 'split_commit_graph_opts'Taylor Blau, Aug 5, 2020
  38. 03/14 commit-graph: pass a 'struct repository *' in more placesTaylor Blau, Aug 5, 2020
  39. 06/14 commit-graph.c: store maximum changed pathsTaylor Blau, Aug 5, 2020
  40. 04/14 t/helper/test-read-graph.c: prepare repo settingsTaylor Blau, Aug 5, 2020
  41. 05/14 commit-graph: respect 'commitGraph.readChangedPaths'Taylor Blau, Aug 5, 2020
  42. 14/14 builtin/commit-graph.c: introduce '--max-new-filters=<n>'Taylor Blau, Aug 5, 2020
  43. 00/14 more miscellaneous Bloom filter improvementsTaylor Blau, Aug 11, 2020
  44. 01/14 commit-graph: introduce 'get_bloom_filter_settings()'Taylor Blau, Aug 11, 2020
  45. SZEDER GáborAug 11, 2020
  46. Taylor BlauAug 11, 2020
  47. SZEDER GáborAug 11, 2020
  48. Taylor BlauAug 11, 2020
  49. SZEDER GáborAug 11, 2020
  50. Derrick StoleeAug 12, 2020
  51. Taylor BlauAug 14, 2020
  52. 02/14 t4216: use an '&&'-chainTaylor Blau, Aug 11, 2020
  53. 03/14 commit-graph: pass a 'struct repository *' in more placesTaylor Blau, Aug 11, 2020
  54. 04/14 t/helper/test-read-graph.c: prepare repo settingsTaylor Blau, Aug 11, 2020
  55. 05/14 commit-graph: respect 'commitGraph.readChangedPaths'Taylor Blau, Aug 11, 2020
  56. 06/14 commit-graph.c: store maximum changed pathsTaylor Blau, Aug 11, 2020
  57. 07/14 bloom: split 'get_bloom_filter()' in twoTaylor Blau, Aug 11, 2020
  58. 11/14 csum-file.h: introduce 'hashwrite_be64()'Taylor Blau, Aug 11, 2020
  59. 08/14 bloom: use provided 'struct bloom_filter_settings'Taylor Blau, Aug 11, 2020
  60. 09/14 bloom/diff: properly short-circuit on max_changesTaylor Blau, Aug 11, 2020
  61. 10/14 commit-graph.c: sort index into commits listTaylor Blau, Aug 11, 2020
  62. 12/14 commit-graph: add large-filters bitmap chunkTaylor Blau, Aug 11, 2020
  63. Derrick StoleeAug 11, 2020
  64. Taylor BlauAug 11, 2020
  65. Taylor BlauAug 11, 2020
  66. SZEDER GáborAug 19, 2020
  67. Taylor BlauSep 2, 2020
  68. SZEDER GáborSep 1, 2020
  69. Taylor BlauSep 2, 2020
  70. 13/14 commit-graph: rename 'split_commit_graph_opts'Taylor Blau, Aug 11, 2020
  71. SZEDER GáborAug 19, 2020
  72. Taylor BlauSep 2, 2020
  73. 14/14 builtin/commit-graph.c: introduce '--max-new-filters=<n>'Taylor Blau, Aug 11, 2020
  74. SZEDER GáborAug 12, 2020
  75. Taylor BlauAug 14, 2020
  76. SZEDER GáborAug 17, 2020
  77. Taylor BlauSep 2, 2020
  78. Derrick StoleeAug 12, 2020
  79. Taylor BlauAug 14, 2020
  80. SZEDER GáborAug 18, 2020
  81. Taylor BlauSep 3, 2020
  82. SZEDER GáborAug 19, 2020
  83. Taylor BlauSep 3, 2020
  84. SZEDER GáborSep 4, 2020
  85. SZEDER GáborSep 1, 2020
  86. Taylor BlauSep 3, 2020
  87. Junio C HamanoSep 3, 2020
  88. Taylor BlauSep 3, 2020
  89. 00/14 more miscellaneous Bloom filter improvementsTaylor Blau, Sep 3, 2020
  90. 01/14 commit-graph: introduce 'get_bloom_filter_settings()'Taylor Blau, Sep 3, 2020
  91. 02/14 t4216: use an '&&'-chainTaylor Blau, Sep 3, 2020
  92. 04/14 t/helper/test-read-graph.c: prepare repo settingsTaylor Blau, Sep 3, 2020
  93. 03/14 commit-graph: pass a 'struct repository *' in more placesTaylor Blau, Sep 3, 2020
  94. 05/14 commit-graph: respect 'commitGraph.readChangedPaths'Taylor Blau, Sep 3, 2020
  95. 06/14 commit-graph.c: store maximum changed pathsTaylor Blau, Sep 3, 2020
  96. 07/14 bloom: split 'get_bloom_filter()' in twoTaylor Blau, Sep 3, 2020
  97. Jakub NarębskiSep 5, 2020
  98. Taylor BlauSep 5, 2020
  99. Jakub NarębskiSep 5, 2020
  100. Taylor BlauSep 5, 2020
  101. Jakub NarębskiSep 5, 2020
  102. Taylor BlauSep 5, 2020
  103. Taylor BlauSep 5, 2020
  104. SZEDER GáborSep 5, 2020
  105. Taylor BlauSep 5, 2020
  106. Junio C HamanoSep 6, 2020
  107. 08/14 bloom: use provided 'struct bloom_filter_settings'Taylor Blau, Sep 3, 2020
  108. 09/14 bloom/diff: properly short-circuit on max_changesTaylor Blau, Sep 3, 2020
  109. 10/14 commit-graph.c: sort index into commits listTaylor Blau, Sep 3, 2020
  110. 11/14 csum-file.h: introduce 'hashwrite_be64()'Taylor Blau, Sep 3, 2020
  111. René ScharfeSep 4, 2020
  112. Taylor BlauSep 4, 2020
  113. 12/14 commit-graph: add large-filters bitmap chunkTaylor Blau, Sep 3, 2020
  114. 13/14 commit-graph: rename 'split_commit_graph_opts'Taylor Blau, Sep 3, 2020
  115. Taylor BlauSep 4, 2020
  116. 14/14 builtin/commit-graph.c: introduce '--max-new-filters=<n>'Taylor Blau, Sep 3, 2020
  117. Derrick StoleeSep 4, 2020

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