git stash broken on MS Windows (automatically modify the files again)

> I have a mysterious problem with one of my git repositories that work
> fine when I check it out on linux, but not when I do that on windows.
>
> On windows, pile of files immediately change themselves - eg when I do
> git diff I see a lot of changes. What is even more interesting, is
> that when I do git stash, nothing happens (it tell me it stashed back,
> but changes are still there, so i can keep stashing and stashing but
> it doesn't help), I still have lot of dirty changes to tracked files
> and I can't get rid of them in any way. It's pretty much like if files
> were containing something what can't be stored on NTFS and windows
> version of git would replace the content with something else.
>
> Because it's private repository I unfortunately can't provide it's
> content, but these files are mostly SQL text files, the screenshot (so
> that colors are preserved), is here: http://snag.gy/93A8S.jpg
>
> Is there any way to "fix" windows git so that it works? Did anyone
> experience this? It may be something related to windows line endings,
> but I am not really sure.
>
> During installation of GIT I checked "keep line endings as they are in
> repository"
>
> Thanks

> I actually can't even commit these changes:
>
> petr.bena@MW7H3TP5JJBR0I ~/Documents/repo (export)
> $ git stash
> Saved working directory and index state WIP on export: ee21f45 Updated inserts
> HEAD is now at ee21f45 Updated inserts
>
> petr.bena@MW7H3TP5JJBR0I ~/Documents/repo (export)
> $ git checkout master
> error: Your local changes to the following files would be overwritten by checkou
> t:
>         BSS/export_home_oracle/scripts_IDAEU001/RENEWAL_BED_NEW/script_sql/creat
> e_new_bed.sql
>         BSS/export_home_oracle/scripts_IDAEU001/appo/RENEWAL_BED/script_sql/crea
> te_new_bed.sql
>         BSS/export_home_oracle/scripts_IDAEU001/audit/audit_off.sql
>         BSS/export_home_oracle/scripts_IDAEU001/audit/audit_on.sql
>         BSS/export_home_oracle/scripts_IDAEU001/create_ts_transito.sql
>         BSS/export_home_oracle/scripts_IDAEU006/RENEWAL_BED/script_sql/create_ne
> w_bed.sql
>         BSS/export_home_oracle/scripts_IDAEU006/bed/script_sql/create_new_bed.sq
> l
> Please, commit your changes or stash them before you can switch branches.
> Aborting
>
> petr.bena@MW7H3TP5JJBR0I ~/Documents/repo (export)
> $ git commit -a
> fatal: Will not add file alias 'BSS/export_home_oracle/scripts_IDAEU001/Audit/au
> dit_off.sql' ('BSS/export_home_oracle/scripts_IDAEU001/audit/audit_off.sql' alre
> ady exists in index)
>
> On Wed, Dec 3, 2014 at 3:33 PM, Petr Bena <benapetr@gmail.com> wrote:
>> I have a mysterious problem with one of my git repositories that work
>> fine when I check it out on linux, but not when I do that on windows.
>>
>> On windows, pile of files immediately change themselves - eg when I do
>> git diff I see a lot of changes. What is even more interesting, is
>> that when I do git stash, nothing happens (it tell me it stashed back,
>> but changes are still there, so i can keep stashing and stashing but
>> it doesn't help), I still have lot of dirty changes to tracked files
>> and I can't get rid of them in any way. It's pretty much like if files
>> were containing something what can't be stored on NTFS and windows
>> version of git would replace the content with something else.
>>
>> Because it's private repository I unfortunately can't provide it's
>> content, but these files are mostly SQL text files, the screenshot (so
>> that colors are preserved), is here: http://snag.gy/93A8S.jpg
>>
>> Is there any way to "fix" windows git so that it works? Did anyone
>> experience this? It may be something related to windows line endings,
>> but I am not really sure.
>>
>> During installation of GIT I checked "keep line endings as they are in
>> repository"
>>
>> Thanks

> Only solution so far was to clone on linux, remove the folder which
> contains these files and push them, then I had to delete the whole
> repository on windows and clone it again.
>
> If I checkout any revision which contains these files repository get
> broken in a way that only solution is deleting it from disk and
> cloning again. Is this a bug?
>

> On 3 December 2014 at 14:48, Petr Bena <benapetr@gmail.com> wrote:
>> Only solution so far was to clone on linux, remove the folder which
>> contains these files and push them, then I had to delete the whole
>> repository on windows and clone it again.
>>
>> If I checkout any revision which contains these files repository get
>> broken in a way that only solution is deleting it from disk and
>> cloning again. Is this a bug?
>>
>
> <snip>
>
>>> fatal: Will not add file alias 'BSS/export_home_oracle/scripts_IDAEU001/Audit/au
>>> dit_off.sql' ('BSS/export_home_oracle/scripts_IDAEU001/audit/audit_off.sql' alre
>>> ady exists in index)
>>>
>
> On your Linux machine (and in the repository), do you actually have
> both 'BSS/export_home_oracle/scripts_IDAEU001/Audit' and
> 'BSS/export_home_oracle/scripts_IDAEU001/audit' directories?