While this might help, I see there are more serious issues here.
If you start "git-shortlog" (or anything that has USE_PAGER but not RUN_SETUP in git.c) inside your project/.git directory (or a bare one, for that matter), the call sequence would become like this:
git.c::main()
-> handle_internal_command()
-> run_command()
-> commit_pager_choice()
-> setup_pager() (this is in pager.c)
-> git_config(git_default_config, NULL)
-> git_path("config")
-> get_git_dir()
-> setup_git_env()
This sets git_dir to ".git"!!!!And that was part of the reason why "git-shortlog" started from a bare repository did not even notice that the default "HEAD" that is given internally by the program is not a valid ref (because it tries to read from .git/HEAD without the patch I sent earlier). Oh, of course that git_config() won't read from the right config file either.
This may be repeating what Jeff said earlier in another thread, but I think we should rethink the start-up sequence carefully. Ideally (I am thinking aloud)...
* Have a single function "git_setup()" that notices --bare and --git-dir
from the command line and GIT_DIR environment, and does the discovery
of git_dir (if not told with the command line or environment
explicitly); if we do not find it, do *NOT* barf. Just record the
facts it finds somewhere (e.g. the location of git_dir, absense of
git_dir, if the repository is explicitly bare, etc.).
* As the next step, still in this single function, if we have git_dir,
find out where the work_tree is, paying attention to --work-tree from
the command line and GIT_WORK_TREE environment if exists. If we do not
have work tree, do *NOT* barf. Again, just record the facts it finds.
If we do not have --work-tree from the command line and if we are not
told that it is --bare from the command line, then we may need to open
the config to see where core.worktree points at.
* Before returning from that single setup function, i think it is Ok to
make it mimick the current git_setup_directory_gently(), cd up to the
normal work-tree top if needed, and make it return prefix.
* After all of the above is done, then we can start futzing with other
things such as pager. At that point we know we can read from the
correct configuratoin.
* Each individual command may decide to refuse to work in the absense of
git_dir and/or work_tree, by calling require_work_tree(), etc.
Hmm?